Results 1 - 20 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15670 | 3' | -61.8 | NC_004065.1 | + | 18336 | 1.13 | 0.0008 |
Target: 5'- gGCCACGAGGCUGCGGCGGUCGCUGCCg -3' miRNA: 3'- -CGGUGCUCCGACGCCGCCAGCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 28607 | 0.78 | 0.191587 |
Target: 5'- cGCgaaaGCGAGGCUGCGGCGGcacaaCGCggacagGCCc -3' miRNA: 3'- -CGg---UGCUCCGACGCCGCCa----GCGa-----CGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 48108 | 0.76 | 0.262964 |
Target: 5'- gGCgGCGGuGGCgGCGGCGGUgggaccucgcgcaCGUUGCCg -3' miRNA: 3'- -CGgUGCU-CCGaCGCCGCCA-------------GCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 90622 | 0.75 | 0.281574 |
Target: 5'- aGCUguGCGGcGCgUGCGGCGGcCGCUGCUg -3' miRNA: 3'- -CGG--UGCUcCG-ACGCCGCCaGCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 203083 | 0.75 | 0.281574 |
Target: 5'- cCCGCGAGcGUcaugGCGGCGGUCGUgGUCg -3' miRNA: 3'- cGGUGCUC-CGa---CGCCGCCAGCGaCGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 88685 | 0.75 | 0.287797 |
Target: 5'- cGCCACcaacGCgacgGCGGCGGgcucCGCUGCCg -3' miRNA: 3'- -CGGUGcuc-CGa---CGCCGCCa---GCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 141349 | 0.75 | 0.287797 |
Target: 5'- uGCCGCuGaAGGC-GCGGCGGUaGCUGgCCa -3' miRNA: 3'- -CGGUG-C-UCCGaCGCCGCCAgCGAC-GG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 66623 | 0.75 | 0.307111 |
Target: 5'- aGCCGCG-GGCUGCGGCGcugCGUgGCg -3' miRNA: 3'- -CGGUGCuCCGACGCCGCca-GCGaCGg -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 200106 | 0.74 | 0.3274 |
Target: 5'- aCCgACGAGuGcCUGCGGCGGUgGUgGCCg -3' miRNA: 3'- cGG-UGCUC-C-GACGCCGCCAgCGaCGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 83548 | 0.74 | 0.3274 |
Target: 5'- uUCACGAGGCaGCGGuCGGcCGCcgcgagGCCg -3' miRNA: 3'- cGGUGCUCCGaCGCC-GCCaGCGa-----CGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 110461 | 0.74 | 0.340755 |
Target: 5'- aGCCcucuucccucucgACG-GGCgGCGGCGcGUCGCgGCCg -3' miRNA: 3'- -CGG-------------UGCuCCGaCGCCGC-CAGCGaCGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 100393 | 0.74 | 0.340755 |
Target: 5'- uGCCGCGc-GCUGCGGCGGacccugaUCGggGCCu -3' miRNA: 3'- -CGGUGCucCGACGCCGCC-------AGCgaCGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 154159 | 0.74 | 0.348666 |
Target: 5'- gGCgGCGGcGGCgGCGGCGGcUGUUGCUg -3' miRNA: 3'- -CGgUGCU-CCGaCGCCGCCaGCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 44531 | 0.73 | 0.363381 |
Target: 5'- uGUUAcCGGGGacgGUGGCGG-CGCUGCCu -3' miRNA: 3'- -CGGU-GCUCCga-CGCCGCCaGCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 98016 | 0.73 | 0.394079 |
Target: 5'- aCCACcgccGGCgcGUGGCGGUCGUUGUCg -3' miRNA: 3'- cGGUGcu--CCGa-CGCCGCCAGCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 167109 | 0.72 | 0.402012 |
Target: 5'- uGCCGCGAGGCccUGGCGa--GCUGCUa -3' miRNA: 3'- -CGGUGCUCCGacGCCGCcagCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 88637 | 0.72 | 0.402012 |
Target: 5'- gGCgACGgaGGGCgGUGGCGGUgcCGCgGCCg -3' miRNA: 3'- -CGgUGC--UCCGaCGCCGCCA--GCGaCGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 203317 | 0.72 | 0.451662 |
Target: 5'- --gAUGAuGGCgGUGGUGGUgCGCUGCCu -3' miRNA: 3'- cggUGCU-CCGaCGCCGCCA-GCGACGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 116123 | 0.72 | 0.455091 |
Target: 5'- cGCCG-GAGGUagcuggucggcguccUGCGGCGGcUCGggGCCg -3' miRNA: 3'- -CGGUgCUCCG---------------ACGCCGCC-AGCgaCGG- -5' |
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15670 | 3' | -61.8 | NC_004065.1 | + | 50605 | 0.71 | 0.459397 |
Target: 5'- aGCgGgGGGGCUcgggaucGCGGCGGUggccaCGCgUGCCa -3' miRNA: 3'- -CGgUgCUCCGA-------CGCCGCCA-----GCG-ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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