miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 3' -61.8 NC_004065.1 + 18336 1.13 0.0008
Target:  5'- gGCCACGAGGCUGCGGCGGUCGCUGCCg -3'
miRNA:   3'- -CGGUGCUCCGACGCCGCCAGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 28607 0.78 0.191587
Target:  5'- cGCgaaaGCGAGGCUGCGGCGGcacaaCGCggacagGCCc -3'
miRNA:   3'- -CGg---UGCUCCGACGCCGCCa----GCGa-----CGG- -5'
15670 3' -61.8 NC_004065.1 + 48108 0.76 0.262964
Target:  5'- gGCgGCGGuGGCgGCGGCGGUgggaccucgcgcaCGUUGCCg -3'
miRNA:   3'- -CGgUGCU-CCGaCGCCGCCA-------------GCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 90622 0.75 0.281574
Target:  5'- aGCUguGCGGcGCgUGCGGCGGcCGCUGCUg -3'
miRNA:   3'- -CGG--UGCUcCG-ACGCCGCCaGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 203083 0.75 0.281574
Target:  5'- cCCGCGAGcGUcaugGCGGCGGUCGUgGUCg -3'
miRNA:   3'- cGGUGCUC-CGa---CGCCGCCAGCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 88685 0.75 0.287797
Target:  5'- cGCCACcaacGCgacgGCGGCGGgcucCGCUGCCg -3'
miRNA:   3'- -CGGUGcuc-CGa---CGCCGCCa---GCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 141349 0.75 0.287797
Target:  5'- uGCCGCuGaAGGC-GCGGCGGUaGCUGgCCa -3'
miRNA:   3'- -CGGUG-C-UCCGaCGCCGCCAgCGAC-GG- -5'
15670 3' -61.8 NC_004065.1 + 66623 0.75 0.307111
Target:  5'- aGCCGCG-GGCUGCGGCGcugCGUgGCg -3'
miRNA:   3'- -CGGUGCuCCGACGCCGCca-GCGaCGg -5'
15670 3' -61.8 NC_004065.1 + 200106 0.74 0.3274
Target:  5'- aCCgACGAGuGcCUGCGGCGGUgGUgGCCg -3'
miRNA:   3'- cGG-UGCUC-C-GACGCCGCCAgCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 83548 0.74 0.3274
Target:  5'- uUCACGAGGCaGCGGuCGGcCGCcgcgagGCCg -3'
miRNA:   3'- cGGUGCUCCGaCGCC-GCCaGCGa-----CGG- -5'
15670 3' -61.8 NC_004065.1 + 110461 0.74 0.340755
Target:  5'- aGCCcucuucccucucgACG-GGCgGCGGCGcGUCGCgGCCg -3'
miRNA:   3'- -CGG-------------UGCuCCGaCGCCGC-CAGCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 100393 0.74 0.340755
Target:  5'- uGCCGCGc-GCUGCGGCGGacccugaUCGggGCCu -3'
miRNA:   3'- -CGGUGCucCGACGCCGCC-------AGCgaCGG- -5'
15670 3' -61.8 NC_004065.1 + 154159 0.74 0.348666
Target:  5'- gGCgGCGGcGGCgGCGGCGGcUGUUGCUg -3'
miRNA:   3'- -CGgUGCU-CCGaCGCCGCCaGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 44531 0.73 0.363381
Target:  5'- uGUUAcCGGGGacgGUGGCGG-CGCUGCCu -3'
miRNA:   3'- -CGGU-GCUCCga-CGCCGCCaGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 98016 0.73 0.394079
Target:  5'- aCCACcgccGGCgcGUGGCGGUCGUUGUCg -3'
miRNA:   3'- cGGUGcu--CCGa-CGCCGCCAGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 167109 0.72 0.402012
Target:  5'- uGCCGCGAGGCccUGGCGa--GCUGCUa -3'
miRNA:   3'- -CGGUGCUCCGacGCCGCcagCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 88637 0.72 0.402012
Target:  5'- gGCgACGgaGGGCgGUGGCGGUgcCGCgGCCg -3'
miRNA:   3'- -CGgUGC--UCCGaCGCCGCCA--GCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 203317 0.72 0.451662
Target:  5'- --gAUGAuGGCgGUGGUGGUgCGCUGCCu -3'
miRNA:   3'- cggUGCU-CCGaCGCCGCCA-GCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 116123 0.72 0.455091
Target:  5'- cGCCG-GAGGUagcuggucggcguccUGCGGCGGcUCGggGCCg -3'
miRNA:   3'- -CGGUgCUCCG---------------ACGCCGCC-AGCgaCGG- -5'
15670 3' -61.8 NC_004065.1 + 50605 0.71 0.459397
Target:  5'- aGCgGgGGGGCUcgggaucGCGGCGGUggccaCGCgUGCCa -3'
miRNA:   3'- -CGgUgCUCCGA-------CGCCGCCA-----GCG-ACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.