miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 3' -61.8 NC_004065.1 + 45532 0.69 0.578634
Target:  5'- cGCCACccGGCgccgcgGCGGCGG-CgGCaGCCg -3'
miRNA:   3'- -CGGUGcuCCGa-----CGCCGCCaG-CGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 117401 0.7 0.522685
Target:  5'- gGCCGCGcgcgcuGGGCUcGCGGCGcggaGUgGCaGCCg -3'
miRNA:   3'- -CGGUGC------UCCGA-CGCCGC----CAgCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 97666 0.7 0.522685
Target:  5'- uUCGCGAucuGGCgcaggaUGUGauacucGCGGUCGCUGCCg -3'
miRNA:   3'- cGGUGCU---CCG------ACGC------CGCCAGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 149704 0.7 0.522685
Target:  5'- cGCCGgGGGGCcGCGGCcG-CGCcgGCCc -3'
miRNA:   3'- -CGGUgCUCCGaCGCCGcCaGCGa-CGG- -5'
15670 3' -61.8 NC_004065.1 + 168636 0.7 0.541135
Target:  5'- uGCCGCG-GGCggagccggcGCGGCGacgucgucUCGUUGCCg -3'
miRNA:   3'- -CGGUGCuCCGa--------CGCCGCc-------AGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 17281 0.7 0.559797
Target:  5'- cGCCG-GAGGUggugucgggUGCGGCGGagacaacggccUCGgaGCCg -3'
miRNA:   3'- -CGGUgCUCCG---------ACGCCGCC-----------AGCgaCGG- -5'
15670 3' -61.8 NC_004065.1 + 128370 0.7 0.559797
Target:  5'- cGCCcauCGGGGCUuCGGCGG-CGagaGCCg -3'
miRNA:   3'- -CGGu--GCUCCGAcGCCGCCaGCga-CGG- -5'
15670 3' -61.8 NC_004065.1 + 61701 0.69 0.569197
Target:  5'- cGUCACGuccgcGGCguaGCGGCGGaUGCgaGCCa -3'
miRNA:   3'- -CGGUGCu----CCGa--CGCCGCCaGCGa-CGG- -5'
15670 3' -61.8 NC_004065.1 + 107444 0.69 0.569197
Target:  5'- aCCAgGAGGUcGUGGuCGGgCGuCUGCCg -3'
miRNA:   3'- cGGUgCUCCGaCGCC-GCCaGC-GACGG- -5'
15670 3' -61.8 NC_004065.1 + 88435 0.7 0.519024
Target:  5'- cGCCGcCGucGCguugGUGGCGGUCGCcucgcgcagagagGCCa -3'
miRNA:   3'- -CGGU-GCucCGa---CGCCGCCAGCGa------------CGG- -5'
15670 3' -61.8 NC_004065.1 + 128408 0.7 0.513551
Target:  5'- gGCCGaGcGGCaGCGGCGGcggCGCcGCCa -3'
miRNA:   3'- -CGGUgCuCCGaCGCCGCCa--GCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 56714 0.71 0.468945
Target:  5'- cGCCgcaGCGGcGGCgGCGGCGGcagcaGCUGUCu -3'
miRNA:   3'- -CGG---UGCU-CCGaCGCCGCCag---CGACGG- -5'
15670 3' -61.8 NC_004065.1 + 66623 0.75 0.307111
Target:  5'- aGCCGCG-GGCUGCGGCGcugCGUgGCg -3'
miRNA:   3'- -CGGUGCuCCGACGCCGCca-GCGaCGg -5'
15670 3' -61.8 NC_004065.1 + 154159 0.74 0.348666
Target:  5'- gGCgGCGGcGGCgGCGGCGGcUGUUGCUg -3'
miRNA:   3'- -CGgUGCU-CCGaCGCCGCCaGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 44531 0.73 0.363381
Target:  5'- uGUUAcCGGGGacgGUGGCGG-CGCUGCCu -3'
miRNA:   3'- -CGGU-GCUCCga-CGCCGCCaGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 98016 0.73 0.394079
Target:  5'- aCCACcgccGGCgcGUGGCGGUCGUUGUCg -3'
miRNA:   3'- cGGUGcu--CCGa-CGCCGCCAGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 116123 0.72 0.455091
Target:  5'- cGCCG-GAGGUagcuggucggcguccUGCGGCGGcUCGggGCCg -3'
miRNA:   3'- -CGGUgCUCCG---------------ACGCCGCC-AGCgaCGG- -5'
15670 3' -61.8 NC_004065.1 + 22034 0.71 0.468945
Target:  5'- gGCCACGgccccgggcAGGCcGCGGUaucccuccggucGGUCGCggcgGCCc -3'
miRNA:   3'- -CGGUGC---------UCCGaCGCCG------------CCAGCGa---CGG- -5'
15670 3' -61.8 NC_004065.1 + 62089 0.71 0.468945
Target:  5'- gGCgACGGcagcGGCaGCGGCGGUCGUUacGCUc -3'
miRNA:   3'- -CGgUGCU----CCGaCGCCGCCAGCGA--CGG- -5'
15670 3' -61.8 NC_004065.1 + 19497 0.71 0.468945
Target:  5'- cGUCGCGAuGGg-GaCGGCGGaacCGCUGCCg -3'
miRNA:   3'- -CGGUGCU-CCgaC-GCCGCCa--GCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.