miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 214085 0.66 0.954337
Target:  5'- cGAGAUaCGGuCUCGACCaCGaUGCGGgCg -3'
miRNA:   3'- -CUCUA-GUCuGAGCUGGaGC-GCGUCgG- -5'
15670 5' -55.7 NC_004065.1 + 226459 0.66 0.95041
Target:  5'- cGAGAcCGGGCUCG-CCUUcugccaGCGCcGCUg -3'
miRNA:   3'- -CUCUaGUCUGAGCuGGAG------CGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 69883 0.66 0.95041
Target:  5'- --uGUCGGACUCGuucuCCUCGCagacGCCg -3'
miRNA:   3'- cucUAGUCUGAGCu---GGAGCGcgu-CGG- -5'
15670 5' -55.7 NC_004065.1 + 107243 0.66 0.950006
Target:  5'- aGAGAaUAGgugaagaagaACUCGACCgugUCGCGCgugaugaGGCCg -3'
miRNA:   3'- -CUCUaGUC----------UGAGCUGG---AGCGCG-------UCGG- -5'
15670 5' -55.7 NC_004065.1 + 171533 0.67 0.946265
Target:  5'- -cGGUCGGACUCGAaaugaguccauCCguaggCGUcCAGCCu -3'
miRNA:   3'- cuCUAGUCUGAGCU-----------GGa----GCGcGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 102888 0.67 0.946265
Target:  5'- cGAGGUCGcGACgccuucCGACgUUGUGCAGgCg -3'
miRNA:   3'- -CUCUAGU-CUGa-----GCUGgAGCGCGUCgG- -5'
15670 5' -55.7 NC_004065.1 + 78651 0.67 0.946265
Target:  5'- aGAGAUCGGccgccaGCgcagCGGCCggCGCcGCGGCg -3'
miRNA:   3'- -CUCUAGUC------UGa---GCUGGa-GCG-CGUCGg -5'
15670 5' -55.7 NC_004065.1 + 116776 0.67 0.941899
Target:  5'- cGAGAUCGccUUCGG--UUGCGCGGCCa -3'
miRNA:   3'- -CUCUAGUcuGAGCUggAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 100306 0.67 0.941899
Target:  5'- -----gAGGCcgCGAuguCUUCGCGCAGCCa -3'
miRNA:   3'- cucuagUCUGa-GCU---GGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 31147 0.67 0.941899
Target:  5'- -cGAcUCGGGCaUCGACaC-CGcCGCGGCCg -3'
miRNA:   3'- cuCU-AGUCUG-AGCUG-GaGC-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 197509 0.67 0.937308
Target:  5'- uAGGUCuccgagGGACcCGGCCgCGCGCGGUa -3'
miRNA:   3'- cUCUAG------UCUGaGCUGGaGCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 67848 0.67 0.937308
Target:  5'- aAGggCAcGGCgaaGACCUgCGcCGCAGCCg -3'
miRNA:   3'- cUCuaGU-CUGag-CUGGA-GC-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 111528 0.67 0.937308
Target:  5'- cGAGAUgCGGuACUCGGCC-CGgGaCGGCa -3'
miRNA:   3'- -CUCUA-GUC-UGAGCUGGaGCgC-GUCGg -5'
15670 5' -55.7 NC_004065.1 + 196983 0.67 0.937308
Target:  5'- gGAGAacagCGGGCgCGACgUCGCGCuGUa -3'
miRNA:   3'- -CUCUa---GUCUGaGCUGgAGCGCGuCGg -5'
15670 5' -55.7 NC_004065.1 + 164620 0.67 0.934445
Target:  5'- gGGGAagAGGCUCGcaGCCUCGgaggaacagucggguCGCGGCg -3'
miRNA:   3'- -CUCUagUCUGAGC--UGGAGC---------------GCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 115336 0.67 0.932492
Target:  5'- -uGGUCAGAagagcCGACCgaggccgcguccUCGCGCGcGCCg -3'
miRNA:   3'- cuCUAGUCUga---GCUGG------------AGCGCGU-CGG- -5'
15670 5' -55.7 NC_004065.1 + 10365 0.67 0.931998
Target:  5'- uGAGAaaaugggcucuccUC-GACUCGuACCUCGCGCGuGUg -3'
miRNA:   3'- -CUCU-------------AGuCUGAGC-UGGAGCGCGU-CGg -5'
15670 5' -55.7 NC_004065.1 + 63506 0.67 0.92745
Target:  5'- cAGGUgCGGA--UGGCCUCGCccucGCGGCCg -3'
miRNA:   3'- cUCUA-GUCUgaGCUGGAGCG----CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 124759 0.67 0.92745
Target:  5'- cGAGAacgcgCAGAUgcuggaGAUC-CGCGCGGCCc -3'
miRNA:   3'- -CUCUa----GUCUGag----CUGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 29399 0.67 0.92745
Target:  5'- -cGAUUcaGGGCUCGGCUgcccgUCGCGCugggcgaccGGCCu -3'
miRNA:   3'- cuCUAG--UCUGAGCUGG-----AGCGCG---------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.