miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15673 5' -55.8 NC_004065.1 + 128526 0.66 0.970368
Target:  5'- -uGCCUCCGCgGcgucgacggagagugGUGUGGC-UGUGUCUg -3'
miRNA:   3'- ucUGGAGGCG-C---------------UACAUCGcACGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 21661 0.66 0.969517
Target:  5'- aAGACCugUCCGCGGgucuugaaacggcagGUAGCGacgcagucGCcGUCCg -3'
miRNA:   3'- -UCUGG--AGGCGCUa--------------CAUCGCa-------CG-CAGG- -5'
15673 5' -55.8 NC_004065.1 + 71664 0.66 0.967465
Target:  5'- aGGGCCUCCucagcagcagcagcgGCGgcGgcaacgggAGCGgcGCGUCCu -3'
miRNA:   3'- -UCUGGAGG---------------CGCuaCa-------UCGCa-CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 27767 0.66 0.96625
Target:  5'- gAGGCacgCCGCGAUGaaucugGCGUCCu -3'
miRNA:   3'- -UCUGga-GGCGCUACaucgcaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 96564 0.66 0.96625
Target:  5'- uGGACC-CCGaGAcggagucgUGUGGaCG-GCGUCCg -3'
miRNA:   3'- -UCUGGaGGCgCU--------ACAUC-GCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 98800 0.66 0.96625
Target:  5'- aGGACgaugCCGCGAcg-GGCG-GCGUCUc -3'
miRNA:   3'- -UCUGga--GGCGCUacaUCGCaCGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 110179 0.66 0.963072
Target:  5'- cGACCUCUGCGgcGgccGCGacGCG-CCg -3'
miRNA:   3'- uCUGGAGGCGCuaCau-CGCa-CGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 116347 0.66 0.963072
Target:  5'- uGGCCauggCCGUGAUGcAGaUGUugaGCGUCCu -3'
miRNA:   3'- uCUGGa---GGCGCUACaUC-GCA---CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 70533 0.66 0.962079
Target:  5'- aAGGCCgCCGCGggGUugcGCcaguucuuucgcauGUGCGUCa -3'
miRNA:   3'- -UCUGGaGGCGCuaCAu--CG--------------CACGCAGg -5'
15673 5' -55.8 NC_004065.1 + 102441 0.66 0.959691
Target:  5'- --cCCUCUGCGAccUGaacGGCGUGcCGUCg -3'
miRNA:   3'- ucuGGAGGCGCU--ACa--UCGCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 45991 0.66 0.959691
Target:  5'- cGACCUggGCGccGUGGCG-GCGUUg -3'
miRNA:   3'- uCUGGAggCGCuaCAUCGCaCGCAGg -5'
15673 5' -55.8 NC_004065.1 + 148473 0.66 0.959691
Target:  5'- cAGAUCUCgGgGAcGUGGCGcGUGaUCCu -3'
miRNA:   3'- -UCUGGAGgCgCUaCAUCGCaCGC-AGG- -5'
15673 5' -55.8 NC_004065.1 + 199292 0.66 0.954985
Target:  5'- -aGCCUCUGaag-GUGGCGUccacgucguucaacGCGUCCg -3'
miRNA:   3'- ucUGGAGGCgcuaCAUCGCA--------------CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 168207 0.67 0.952303
Target:  5'- -cGCCUCCGaaucCGAUGaAGCGc-CGUCCg -3'
miRNA:   3'- ucUGGAGGC----GCUACaUCGCacGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 108918 0.67 0.952303
Target:  5'- -cGCCUCCGCGAcgaaAGCGcgcUGCG-CCu -3'
miRNA:   3'- ucUGGAGGCGCUaca-UCGC---ACGCaGG- -5'
15673 5' -55.8 NC_004065.1 + 45783 0.67 0.952303
Target:  5'- -cGCCgCCGCGGcgccggGUGGCGUagacCGUCCg -3'
miRNA:   3'- ucUGGaGGCGCUa-----CAUCGCAc---GCAGG- -5'
15673 5' -55.8 NC_004065.1 + 18132 0.67 0.951911
Target:  5'- cGGGCCcgCCGCGGgacgggaUGuUGGCGguauCGUCCg -3'
miRNA:   3'- -UCUGGa-GGCGCU-------AC-AUCGCac--GCAGG- -5'
15673 5' -55.8 NC_004065.1 + 101502 0.67 0.948288
Target:  5'- aGGugUUCguacaacuCGCGA-GUAGCGUcgGCGUCUa -3'
miRNA:   3'- -UCugGAG--------GCGCUaCAUCGCA--CGCAGG- -5'
15673 5' -55.8 NC_004065.1 + 97264 0.67 0.948288
Target:  5'- cGACCUUCGCGccgGUAG-GUGcCGUUg -3'
miRNA:   3'- uCUGGAGGCGCua-CAUCgCAC-GCAGg -5'
15673 5' -55.8 NC_004065.1 + 229656 0.67 0.948288
Target:  5'- cAGGCUcgucaggCgGCgGAUGUGGgugaGUGCGUCCg -3'
miRNA:   3'- -UCUGGa------GgCG-CUACAUCg---CACGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.