miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 1000 0.67 0.972783
Target:  5'- gGCAGCcgcugucgggaGACgAGCgugccccgcaGGCAGGcGCAGCGACg -3'
miRNA:   3'- -UGUCG-----------UUG-UCG----------UCGUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 1444 0.69 0.922335
Target:  5'- --cGUAGCAGUAGUAccccGGCAGCGGCg -3'
miRNA:   3'- uguCGUUGUCGUCGUuc--UCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 6432 0.74 0.733413
Target:  5'- cAUAGCAccgACAGCgAGCcAGAGUAGCGAg -3'
miRNA:   3'- -UGUCGU---UGUCG-UCGuUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 11310 0.73 0.801244
Target:  5'- uCAGCGucgccACAGaCAGCAAGuAGCGGCAc- -3'
miRNA:   3'- uGUCGU-----UGUC-GUCGUUC-UCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 13178 0.68 0.966733
Target:  5'- cGCGGCgAACAGCAGacccAGCAGgAGCc -3'
miRNA:   3'- -UGUCG-UUGUCGUCguucUCGUCgUUG- -5'
15674 3' -52.3 NC_004065.1 + 16864 0.67 0.972783
Target:  5'- cACGGCGAgGGCgAGCcAGAaCAGCAGa -3'
miRNA:   3'- -UGUCGUUgUCG-UCGuUCUcGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 18730 0.68 0.95597
Target:  5'- cACAGagucCAGCAGCAGUGAcAGUAGCGGg -3'
miRNA:   3'- -UGUC----GUUGUCGUCGUUcUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 19236 0.82 0.330631
Target:  5'- gACAGCAgggacaGCAGCAGCAcagccaccacacccaGGuGCAGCAGCa -3'
miRNA:   3'- -UGUCGU------UGUCGUCGU---------------UCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 19418 0.68 0.966733
Target:  5'- uCGGCAgaaAGCGGCAucGGCAGCAu- -3'
miRNA:   3'- uGUCGUug-UCGUCGUucUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 19575 0.67 0.972783
Target:  5'- -uGGCGGCGGUAGCGucGGCuGCGAa -3'
miRNA:   3'- ugUCGUUGUCGUCGUucUCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 20219 1.1 0.005538
Target:  5'- aACAGCAACAGCAGCAAGAGCAGCAACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 20254 0.76 0.5968
Target:  5'- uCAGCAACAGCAGUcgcGGAcgcacacGCAGCAGCn -3'
miRNA:   3'- uGUCGUUGUCGUCGu--UCU-------CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 21741 0.69 0.927895
Target:  5'- uGCGGCAACAGCGGCAccuGCGuGUggAACu -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucuCGU-CG--UUG- -5'
15674 3' -52.3 NC_004065.1 + 23132 0.71 0.876432
Target:  5'- gGCuGCGACAGCAGCGu--GCuGCGAa -3'
miRNA:   3'- -UGuCGUUGUCGUCGUucuCGuCGUUg -5'
15674 3' -52.3 NC_004065.1 + 24063 0.81 0.367434
Target:  5'- -gAGCGGCGGCAGCAuGAGCGGCu-- -3'
miRNA:   3'- ugUCGUUGUCGUCGUuCUCGUCGuug -5'
15674 3' -52.3 NC_004065.1 + 24528 0.79 0.466155
Target:  5'- gAUGGCGGCGGCAGCGAcGA-CGGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUU-CUcGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24669 0.74 0.712017
Target:  5'- uCGGCAGCAGCGGCAAGAucuacaucuaccuGCuucucacgcGCAGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUCU-------------CGu--------CGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24719 0.74 0.733413
Target:  5'- --cGUGACAGCAGagAAGAGCGGCGAg -3'
miRNA:   3'- uguCGUUGUCGUCg-UUCUCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 24852 0.78 0.525447
Target:  5'- aACAcCGGCGGCGGCGGuGGCGGCGACg -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24861 0.73 0.75341
Target:  5'- gGCGGCGACGGCGGCcucGAcGGUGGCAAa -3'
miRNA:   3'- -UGUCGUUGUCGUCG---UUcUCGUCGUUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.