Results 1 - 20 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15674 | 3' | -52.3 | NC_004065.1 | + | 1000 | 0.67 | 0.972783 |
Target: 5'- gGCAGCcgcugucgggaGACgAGCgugccccgcaGGCAGGcGCAGCGACg -3' miRNA: 3'- -UGUCG-----------UUG-UCG----------UCGUUCuCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 1444 | 0.69 | 0.922335 |
Target: 5'- --cGUAGCAGUAGUAccccGGCAGCGGCg -3' miRNA: 3'- uguCGUUGUCGUCGUuc--UCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 6432 | 0.74 | 0.733413 |
Target: 5'- cAUAGCAccgACAGCgAGCcAGAGUAGCGAg -3' miRNA: 3'- -UGUCGU---UGUCG-UCGuUCUCGUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 11310 | 0.73 | 0.801244 |
Target: 5'- uCAGCGucgccACAGaCAGCAAGuAGCGGCAc- -3' miRNA: 3'- uGUCGU-----UGUC-GUCGUUC-UCGUCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 13178 | 0.68 | 0.966733 |
Target: 5'- cGCGGCgAACAGCAGacccAGCAGgAGCc -3' miRNA: 3'- -UGUCG-UUGUCGUCguucUCGUCgUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 16864 | 0.67 | 0.972783 |
Target: 5'- cACGGCGAgGGCgAGCcAGAaCAGCAGa -3' miRNA: 3'- -UGUCGUUgUCG-UCGuUCUcGUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 18730 | 0.68 | 0.95597 |
Target: 5'- cACAGagucCAGCAGCAGUGAcAGUAGCGGg -3' miRNA: 3'- -UGUC----GUUGUCGUCGUUcUCGUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 19236 | 0.82 | 0.330631 |
Target: 5'- gACAGCAgggacaGCAGCAGCAcagccaccacacccaGGuGCAGCAGCa -3' miRNA: 3'- -UGUCGU------UGUCGUCGU---------------UCuCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 19418 | 0.68 | 0.966733 |
Target: 5'- uCGGCAgaaAGCGGCAucGGCAGCAu- -3' miRNA: 3'- uGUCGUug-UCGUCGUucUCGUCGUug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 19575 | 0.67 | 0.972783 |
Target: 5'- -uGGCGGCGGUAGCGucGGCuGCGAa -3' miRNA: 3'- ugUCGUUGUCGUCGUucUCGuCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 20219 | 1.1 | 0.005538 |
Target: 5'- aACAGCAACAGCAGCAAGAGCAGCAACa -3' miRNA: 3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 20254 | 0.76 | 0.5968 |
Target: 5'- uCAGCAACAGCAGUcgcGGAcgcacacGCAGCAGCn -3' miRNA: 3'- uGUCGUUGUCGUCGu--UCU-------CGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 21741 | 0.69 | 0.927895 |
Target: 5'- uGCGGCAACAGCGGCAccuGCGuGUggAACu -3' miRNA: 3'- -UGUCGUUGUCGUCGUucuCGU-CG--UUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 23132 | 0.71 | 0.876432 |
Target: 5'- gGCuGCGACAGCAGCGu--GCuGCGAa -3' miRNA: 3'- -UGuCGUUGUCGUCGUucuCGuCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24063 | 0.81 | 0.367434 |
Target: 5'- -gAGCGGCGGCAGCAuGAGCGGCu-- -3' miRNA: 3'- ugUCGUUGUCGUCGUuCUCGUCGuug -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24528 | 0.79 | 0.466155 |
Target: 5'- gAUGGCGGCGGCAGCGAcGA-CGGCAGCg -3' miRNA: 3'- -UGUCGUUGUCGUCGUU-CUcGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24669 | 0.74 | 0.712017 |
Target: 5'- uCGGCAGCAGCGGCAAGAucuacaucuaccuGCuucucacgcGCAGCg -3' miRNA: 3'- uGUCGUUGUCGUCGUUCU-------------CGu--------CGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24719 | 0.74 | 0.733413 |
Target: 5'- --cGUGACAGCAGagAAGAGCGGCGAg -3' miRNA: 3'- uguCGUUGUCGUCg-UUCUCGUCGUUg -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24852 | 0.78 | 0.525447 |
Target: 5'- aACAcCGGCGGCGGCGGuGGCGGCGACg -3' miRNA: 3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5' |
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15674 | 3' | -52.3 | NC_004065.1 | + | 24861 | 0.73 | 0.75341 |
Target: 5'- gGCGGCGACGGCGGCcucGAcGGUGGCAAa -3' miRNA: 3'- -UGUCGUUGUCGUCG---UUcUCGUCGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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