miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 5' -56.7 NC_004065.1 + 76672 0.66 0.952237
Target:  5'- aACGGa-UCgCGUCGgcGCCGCCGUCc- -3'
miRNA:   3'- -UGCCacAG-GCAGCauUGGUGGCGGug -5'
15674 5' -56.7 NC_004065.1 + 31252 0.66 0.952237
Target:  5'- gACcGUGUCCGaUCGUcucuGCgGUCGCCACg -3'
miRNA:   3'- -UGcCACAGGC-AGCAu---UGgUGGCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 90143 0.66 0.952237
Target:  5'- cGCGGccaccucGUCCGUCcUGccGCCGgcuCCGCCGCc -3'
miRNA:   3'- -UGCCa------CAGGCAGcAU--UGGU---GGCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 125104 0.66 0.952237
Target:  5'- uGCGGUaGUgCGU-GUAcGCCGCCGgCACc -3'
miRNA:   3'- -UGCCA-CAgGCAgCAU-UGGUGGCgGUG- -5'
15674 5' -56.7 NC_004065.1 + 198934 0.66 0.949863
Target:  5'- cCGGgcguucugaucgCCGccCGUGGCCACCaGCCGCg -3'
miRNA:   3'- uGCCaca---------GGCa-GCAUUGGUGG-CGGUG- -5'
15674 5' -56.7 NC_004065.1 + 30916 0.66 0.948237
Target:  5'- --cGUGUCCGUCGa---CAUCGCCGg -3'
miRNA:   3'- ugcCACAGGCAGCauugGUGGCGGUg -5'
15674 5' -56.7 NC_004065.1 + 47170 0.66 0.948237
Target:  5'- -aGGUcgUCGUCGUGACCcAUCGCgGCc -3'
miRNA:   3'- ugCCAcaGGCAGCAUUGG-UGGCGgUG- -5'
15674 5' -56.7 NC_004065.1 + 93604 0.66 0.946995
Target:  5'- gGCGG-GUCUGgccggCGgcgGGCCGgcucgagcuuuuauCCGCCACg -3'
miRNA:   3'- -UGCCaCAGGCa----GCa--UUGGU--------------GGCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 103693 0.66 0.94402
Target:  5'- uCGG-GUCCGcUGgaGCUGCCGCCGa -3'
miRNA:   3'- uGCCaCAGGCaGCauUGGUGGCGGUg -5'
15674 5' -56.7 NC_004065.1 + 118173 0.66 0.94402
Target:  5'- gGCGGcGgCCGUCacGGCUGCCGCCGu -3'
miRNA:   3'- -UGCCaCaGGCAGcaUUGGUGGCGGUg -5'
15674 5' -56.7 NC_004065.1 + 149697 0.66 0.94402
Target:  5'- -aGGUGaaCGcCGgggGGCCGCgGCCGCg -3'
miRNA:   3'- ugCCACagGCaGCa--UUGGUGgCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 58055 0.66 0.94402
Target:  5'- gACGaccccUCCGcCGccGCCGCCGCCACc -3'
miRNA:   3'- -UGCcac--AGGCaGCauUGGUGGCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 115460 0.66 0.94402
Target:  5'- gGCGGUaugccCCGUCGcggcGGCCACgGCCGg -3'
miRNA:   3'- -UGCCAca---GGCAGCa---UUGGUGgCGGUg -5'
15674 5' -56.7 NC_004065.1 + 114022 0.66 0.94402
Target:  5'- ----aGUCgGUCGUcuGCCGCCGCgGCu -3'
miRNA:   3'- ugccaCAGgCAGCAu-UGGUGGCGgUG- -5'
15674 5' -56.7 NC_004065.1 + 36455 0.66 0.94402
Target:  5'- cACGGUG-CgGcUGUAACCGCCaCCAUu -3'
miRNA:   3'- -UGCCACaGgCaGCAUUGGUGGcGGUG- -5'
15674 5' -56.7 NC_004065.1 + 164928 0.66 0.94402
Target:  5'- uGCGGguggGUCgGUCGgaucGACCugggcgacGCgCGCCGCg -3'
miRNA:   3'- -UGCCa---CAGgCAGCa---UUGG--------UG-GCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 68182 0.66 0.939586
Target:  5'- gACGGag-CUGUCG--GCC-CCGCCGCu -3'
miRNA:   3'- -UGCCacaGGCAGCauUGGuGGCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 52357 0.66 0.939586
Target:  5'- aGCGGUcuaCGUCGgucuucGgCGCCGCCGCu -3'
miRNA:   3'- -UGCCAcagGCAGCau----UgGUGGCGGUG- -5'
15674 5' -56.7 NC_004065.1 + 96984 0.66 0.939586
Target:  5'- cCGGccGUCCGUCGc-GCUGCUGCgACg -3'
miRNA:   3'- uGCCa-CAGGCAGCauUGGUGGCGgUG- -5'
15674 5' -56.7 NC_004065.1 + 76280 0.66 0.939586
Target:  5'- aGCGGUGUCgGugauccugagcUCGUucucgucgAGCCGgaggauCCGCCGCg -3'
miRNA:   3'- -UGCCACAGgC-----------AGCA--------UUGGU------GGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.