miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15678 3' -56.7 NC_004065.1 + 45139 0.66 0.938858
Target:  5'- uGCCUCCGcGAAcggaggcguccuGCUCgagCGAGAGgCGa- -3'
miRNA:   3'- gCGGAGGC-CUU------------CGAGa--GCUCUC-GUag -5'
15678 3' -56.7 NC_004065.1 + 198274 0.66 0.938858
Target:  5'- gCGCCgCaaGGAGCgUCUgGAGAGCAUg -3'
miRNA:   3'- -GCGGaGgcCUUCG-AGAgCUCUCGUAg -5'
15678 3' -56.7 NC_004065.1 + 125506 0.66 0.938858
Target:  5'- aCGgCgacCCGGcGGC-CUCGAGAcggGCAUCg -3'
miRNA:   3'- -GCgGa--GGCCuUCGaGAGCUCU---CGUAG- -5'
15678 3' -56.7 NC_004065.1 + 226634 0.66 0.934124
Target:  5'- gCGCuCUCCGaGuGGCUCgaggCGAG-GUGUCa -3'
miRNA:   3'- -GCG-GAGGC-CuUCGAGa---GCUCuCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 19197 0.66 0.934124
Target:  5'- -aCCUCCGGccGCUCUgCGcGAGCcggugGUCg -3'
miRNA:   3'- gcGGAGGCCuuCGAGA-GCuCUCG-----UAG- -5'
15678 3' -56.7 NC_004065.1 + 195291 0.66 0.929164
Target:  5'- gGCCaggUGGAAGCUCUUGaAGucgcGCAUCg -3'
miRNA:   3'- gCGGag-GCCUUCGAGAGC-UCu---CGUAG- -5'
15678 3' -56.7 NC_004065.1 + 119307 0.66 0.923979
Target:  5'- gGUCUUCGGGucgaggguggcGGCUCUCGcccuGGGCAg- -3'
miRNA:   3'- gCGGAGGCCU-----------UCGAGAGCu---CUCGUag -5'
15678 3' -56.7 NC_004065.1 + 64873 0.67 0.918567
Target:  5'- gGCCuUCUGGAAGUccgUCUCuAGGGCGg- -3'
miRNA:   3'- gCGG-AGGCCUUCG---AGAGcUCUCGUag -5'
15678 3' -56.7 NC_004065.1 + 169589 0.67 0.912931
Target:  5'- gCGgCUCCGGccGGUUCgCGGGGGcCGUCa -3'
miRNA:   3'- -GCgGAGGCCu-UCGAGaGCUCUC-GUAG- -5'
15678 3' -56.7 NC_004065.1 + 198395 0.67 0.912931
Target:  5'- aGCCUgCUGGu-GUaCUCGAGAGCGg- -3'
miRNA:   3'- gCGGA-GGCCuuCGaGAGCUCUCGUag -5'
15678 3' -56.7 NC_004065.1 + 176345 0.67 0.912931
Target:  5'- cCGCUUgCGGcGGCuUCUCGAG-GCAg- -3'
miRNA:   3'- -GCGGAgGCCuUCG-AGAGCUCuCGUag -5'
15678 3' -56.7 NC_004065.1 + 165662 0.67 0.900987
Target:  5'- aGCCUgCGGAcGCgaUC-CGAGAGgAUCu -3'
miRNA:   3'- gCGGAgGCCUuCG--AGaGCUCUCgUAG- -5'
15678 3' -56.7 NC_004065.1 + 224452 0.67 0.894684
Target:  5'- uCGCCcgggCCGGGcAGCUCaacCGGGAGCu-- -3'
miRNA:   3'- -GCGGa---GGCCU-UCGAGa--GCUCUCGuag -5'
15678 3' -56.7 NC_004065.1 + 110103 0.67 0.888164
Target:  5'- -uCCUCUGGAAaCUCcucaacucCGAGAGCGUCu -3'
miRNA:   3'- gcGGAGGCCUUcGAGa-------GCUCUCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 18168 0.67 0.8875
Target:  5'- uGCCccgauaUCCaGGAGGCgacagucUCUCGAcGGGCGUCc -3'
miRNA:   3'- gCGG------AGG-CCUUCG-------AGAGCU-CUCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 130594 0.67 0.8875
Target:  5'- aGCgUCCGGugacaaagagcgaGAGCUCcCGGGAGCu-- -3'
miRNA:   3'- gCGgAGGCC-------------UUCGAGaGCUCUCGuag -5'
15678 3' -56.7 NC_004065.1 + 74406 0.68 0.881431
Target:  5'- cCGCCUgCGG-GGUUCUCGGcccGGGCAc- -3'
miRNA:   3'- -GCGGAgGCCuUCGAGAGCU---CUCGUag -5'
15678 3' -56.7 NC_004065.1 + 115399 0.68 0.881431
Target:  5'- cCGCCggCCGGcGGUUC-CGAGGcCAUCa -3'
miRNA:   3'- -GCGGa-GGCCuUCGAGaGCUCUcGUAG- -5'
15678 3' -56.7 NC_004065.1 + 147253 0.68 0.874488
Target:  5'- gCGCCaCCGGAcgccuGCUCUCcGAGGcCGUCu -3'
miRNA:   3'- -GCGGaGGCCUu----CGAGAG-CUCUcGUAG- -5'
15678 3' -56.7 NC_004065.1 + 131286 0.68 0.874488
Target:  5'- -cCCUCCGGggGUUggUGAGcgacGGCGUCa -3'
miRNA:   3'- gcGGAGGCCuuCGAgaGCUC----UCGUAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.