Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15679 | 3' | -56.3 | NC_004065.1 | + | 200471 | 0.66 | 0.951786 |
Target: 5'- --gCGGGAgcgCGGCCUGaUGCcgacaGGCCu -3' miRNA: 3'- guaGCUCUa--GCCGGACgACGag---UCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 42707 | 0.66 | 0.951786 |
Target: 5'- ---aGAGGUCGGCgaGC-GCUCcuccGCCc -3' miRNA: 3'- guagCUCUAGCCGgaCGaCGAGu---CGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 187776 | 0.66 | 0.951786 |
Target: 5'- gGUCGGGAaCGGUacgaacugGCcGCUCGGCa -3' miRNA: 3'- gUAGCUCUaGCCGga------CGaCGAGUCGg -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 152112 | 0.66 | 0.951786 |
Target: 5'- -uUCGAGGUgcCGGUCUaCUGCguccucaacaacUCGGCCu -3' miRNA: 3'- guAGCUCUA--GCCGGAcGACG------------AGUCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 18345 | 0.66 | 0.951786 |
Target: 5'- ---aGAGAUgcCGGCCacgagGCUGCggCGGUCg -3' miRNA: 3'- guagCUCUA--GCCGGa----CGACGa-GUCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 151921 | 0.66 | 0.951786 |
Target: 5'- aCAUCGAGuUCGGgCUGCccCUCAaGUCc -3' miRNA: 3'- -GUAGCUCuAGCCgGACGacGAGU-CGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 114362 | 0.66 | 0.947705 |
Target: 5'- uCGUCGGccUCGGCCgGCaGCUC-GCUg -3' miRNA: 3'- -GUAGCUcuAGCCGGaCGaCGAGuCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 138362 | 0.66 | 0.947284 |
Target: 5'- gAUCGAGA-CGGCCggggGCaacuucuUGCUC-GUCa -3' miRNA: 3'- gUAGCUCUaGCCGGa---CG-------ACGAGuCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 142769 | 0.66 | 0.946437 |
Target: 5'- --aCGAcGA-CGGCCUGCUGgUgguggcgccgggggCGGCCa -3' miRNA: 3'- guaGCU-CUaGCCGGACGACgA--------------GUCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 37132 | 0.66 | 0.943401 |
Target: 5'- gCGUCaGGAc--GCCUGCUGCUgGGCg -3' miRNA: 3'- -GUAGcUCUagcCGGACGACGAgUCGg -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 103295 | 0.66 | 0.943401 |
Target: 5'- -uUCGAGGcccgCGGCg-GCagGCUCAGCg -3' miRNA: 3'- guAGCUCUa---GCCGgaCGa-CGAGUCGg -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 91291 | 0.66 | 0.943401 |
Target: 5'- uCAUCGAGGcCGGUCUGCagcaGUUC-GUCg -3' miRNA: 3'- -GUAGCUCUaGCCGGACGa---CGAGuCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 169421 | 0.66 | 0.942067 |
Target: 5'- aCAUCGAGAcCGGCCcguacgagugaucgUGC-GCUCgcgAGCg -3' miRNA: 3'- -GUAGCUCUaGCCGG--------------ACGaCGAG---UCGg -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 93344 | 0.66 | 0.938873 |
Target: 5'- -cUCGAGc-CGGCCcGCcGC-CGGCCa -3' miRNA: 3'- guAGCUCuaGCCGGaCGaCGaGUCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 32155 | 0.66 | 0.934119 |
Target: 5'- --aCGAGGUCuGCgaGCUGgUCAucGCCg -3' miRNA: 3'- guaGCUCUAGcCGgaCGACgAGU--CGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 66662 | 0.66 | 0.932649 |
Target: 5'- gGUCGGGAugcugcgcgucuccUCGGUCaGCgaGCgCAGCCg -3' miRNA: 3'- gUAGCUCU--------------AGCCGGaCGa-CGaGUCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 71550 | 0.67 | 0.923929 |
Target: 5'- gAUCGAGAUCuuGGCCgccGUcgUGCUCucuucagguaAGCCc -3' miRNA: 3'- gUAGCUCUAG--CCGGa--CG--ACGAG----------UCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 38886 | 0.67 | 0.923929 |
Target: 5'- aCAUCGuGAUgGGaUCgucgggGCUuucGCUCGGCCa -3' miRNA: 3'- -GUAGCuCUAgCC-GGa-----CGA---CGAGUCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 60253 | 0.67 | 0.923929 |
Target: 5'- gCAUCaGGAaC-GCCUccuucaucaccgGCUGCUCGGCCg -3' miRNA: 3'- -GUAGcUCUaGcCGGA------------CGACGAGUCGG- -5' |
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15679 | 3' | -56.3 | NC_004065.1 | + | 133090 | 0.67 | 0.91512 |
Target: 5'- -cUCGGGAUCGGCCgcgcgacgGUaagugaggcagguuuUGCUCAGg- -3' miRNA: 3'- guAGCUCUAGCCGGa-------CG---------------ACGAGUCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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