miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15679 3' -56.3 NC_004065.1 + 200471 0.66 0.951786
Target:  5'- --gCGGGAgcgCGGCCUGaUGCcgacaGGCCu -3'
miRNA:   3'- guaGCUCUa--GCCGGACgACGag---UCGG- -5'
15679 3' -56.3 NC_004065.1 + 42707 0.66 0.951786
Target:  5'- ---aGAGGUCGGCgaGC-GCUCcuccGCCc -3'
miRNA:   3'- guagCUCUAGCCGgaCGaCGAGu---CGG- -5'
15679 3' -56.3 NC_004065.1 + 187776 0.66 0.951786
Target:  5'- gGUCGGGAaCGGUacgaacugGCcGCUCGGCa -3'
miRNA:   3'- gUAGCUCUaGCCGga------CGaCGAGUCGg -5'
15679 3' -56.3 NC_004065.1 + 152112 0.66 0.951786
Target:  5'- -uUCGAGGUgcCGGUCUaCUGCguccucaacaacUCGGCCu -3'
miRNA:   3'- guAGCUCUA--GCCGGAcGACG------------AGUCGG- -5'
15679 3' -56.3 NC_004065.1 + 18345 0.66 0.951786
Target:  5'- ---aGAGAUgcCGGCCacgagGCUGCggCGGUCg -3'
miRNA:   3'- guagCUCUA--GCCGGa----CGACGa-GUCGG- -5'
15679 3' -56.3 NC_004065.1 + 151921 0.66 0.951786
Target:  5'- aCAUCGAGuUCGGgCUGCccCUCAaGUCc -3'
miRNA:   3'- -GUAGCUCuAGCCgGACGacGAGU-CGG- -5'
15679 3' -56.3 NC_004065.1 + 114362 0.66 0.947705
Target:  5'- uCGUCGGccUCGGCCgGCaGCUC-GCUg -3'
miRNA:   3'- -GUAGCUcuAGCCGGaCGaCGAGuCGG- -5'
15679 3' -56.3 NC_004065.1 + 138362 0.66 0.947284
Target:  5'- gAUCGAGA-CGGCCggggGCaacuucuUGCUC-GUCa -3'
miRNA:   3'- gUAGCUCUaGCCGGa---CG-------ACGAGuCGG- -5'
15679 3' -56.3 NC_004065.1 + 142769 0.66 0.946437
Target:  5'- --aCGAcGA-CGGCCUGCUGgUgguggcgccgggggCGGCCa -3'
miRNA:   3'- guaGCU-CUaGCCGGACGACgA--------------GUCGG- -5'
15679 3' -56.3 NC_004065.1 + 37132 0.66 0.943401
Target:  5'- gCGUCaGGAc--GCCUGCUGCUgGGCg -3'
miRNA:   3'- -GUAGcUCUagcCGGACGACGAgUCGg -5'
15679 3' -56.3 NC_004065.1 + 103295 0.66 0.943401
Target:  5'- -uUCGAGGcccgCGGCg-GCagGCUCAGCg -3'
miRNA:   3'- guAGCUCUa---GCCGgaCGa-CGAGUCGg -5'
15679 3' -56.3 NC_004065.1 + 91291 0.66 0.943401
Target:  5'- uCAUCGAGGcCGGUCUGCagcaGUUC-GUCg -3'
miRNA:   3'- -GUAGCUCUaGCCGGACGa---CGAGuCGG- -5'
15679 3' -56.3 NC_004065.1 + 169421 0.66 0.942067
Target:  5'- aCAUCGAGAcCGGCCcguacgagugaucgUGC-GCUCgcgAGCg -3'
miRNA:   3'- -GUAGCUCUaGCCGG--------------ACGaCGAG---UCGg -5'
15679 3' -56.3 NC_004065.1 + 93344 0.66 0.938873
Target:  5'- -cUCGAGc-CGGCCcGCcGC-CGGCCa -3'
miRNA:   3'- guAGCUCuaGCCGGaCGaCGaGUCGG- -5'
15679 3' -56.3 NC_004065.1 + 32155 0.66 0.934119
Target:  5'- --aCGAGGUCuGCgaGCUGgUCAucGCCg -3'
miRNA:   3'- guaGCUCUAGcCGgaCGACgAGU--CGG- -5'
15679 3' -56.3 NC_004065.1 + 66662 0.66 0.932649
Target:  5'- gGUCGGGAugcugcgcgucuccUCGGUCaGCgaGCgCAGCCg -3'
miRNA:   3'- gUAGCUCU--------------AGCCGGaCGa-CGaGUCGG- -5'
15679 3' -56.3 NC_004065.1 + 71550 0.67 0.923929
Target:  5'- gAUCGAGAUCuuGGCCgccGUcgUGCUCucuucagguaAGCCc -3'
miRNA:   3'- gUAGCUCUAG--CCGGa--CG--ACGAG----------UCGG- -5'
15679 3' -56.3 NC_004065.1 + 38886 0.67 0.923929
Target:  5'- aCAUCGuGAUgGGaUCgucgggGCUuucGCUCGGCCa -3'
miRNA:   3'- -GUAGCuCUAgCC-GGa-----CGA---CGAGUCGG- -5'
15679 3' -56.3 NC_004065.1 + 60253 0.67 0.923929
Target:  5'- gCAUCaGGAaC-GCCUccuucaucaccgGCUGCUCGGCCg -3'
miRNA:   3'- -GUAGcUCUaGcCGGA------------CGACGAGUCGG- -5'
15679 3' -56.3 NC_004065.1 + 133090 0.67 0.91512
Target:  5'- -cUCGGGAUCGGCCgcgcgacgGUaagugaggcagguuuUGCUCAGg- -3'
miRNA:   3'- guAGCUCUAGCCGGa-------CG---------------ACGAGUCgg -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.