miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 5' -52 NC_004084.1 + 3779 0.66 0.913809
Target:  5'- uGCCgUUG-CGCGGGUUGACgacgauUCGAuacgugacGCCg -3'
miRNA:   3'- gCGG-AACaGCGUCUAGCUG------AGCU--------UGG- -5'
16250 5' -52 NC_004084.1 + 52286 0.66 0.913809
Target:  5'- gGCgCUgGUCGCGGAaucgcaUCGACcUGAACg -3'
miRNA:   3'- gCG-GAaCAGCGUCU------AGCUGaGCUUGg -5'
16250 5' -52 NC_004084.1 + 40269 0.66 0.913809
Target:  5'- aCGCUcg--CGCuGAUCGACcCGGACUc -3'
miRNA:   3'- -GCGGaacaGCGuCUAGCUGaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 26297 0.66 0.913809
Target:  5'- gGUCU-GUCGacCAGAUCGugUCGuACg -3'
miRNA:   3'- gCGGAaCAGC--GUCUAGCugAGCuUGg -5'
16250 5' -52 NC_004084.1 + 31402 0.66 0.911241
Target:  5'- aCGCCgauaucggcgaaGUCGCAGA-CGACgCG-GCCg -3'
miRNA:   3'- -GCGGaa----------CAGCGUCUaGCUGaGCuUGG- -5'
16250 5' -52 NC_004084.1 + 19554 0.66 0.907306
Target:  5'- uGUCUUG-CGaCcGGUCGAgauccucacuCUCGAGCCa -3'
miRNA:   3'- gCGGAACaGC-GuCUAGCU----------GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 48559 0.66 0.907306
Target:  5'- -aCCUcGUCGCGG-UCGAggCGAAUCa -3'
miRNA:   3'- gcGGAaCAGCGUCuAGCUgaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 37487 0.66 0.900528
Target:  5'- uCGUCUUcGUCuCGGAcuucgUCGAUUCGGACg -3'
miRNA:   3'- -GCGGAA-CAGcGUCU-----AGCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 42131 0.66 0.900528
Target:  5'- uGCCguugaggugacUGUUGCAGGgacugcacUCGACUgcaGAACCg -3'
miRNA:   3'- gCGGa----------ACAGCGUCU--------AGCUGAg--CUUGG- -5'
16250 5' -52 NC_004084.1 + 45731 0.66 0.900528
Target:  5'- aCGCg--GU-GCuGGUCGGCUaCGAACCa -3'
miRNA:   3'- -GCGgaaCAgCGuCUAGCUGA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 44622 0.66 0.900528
Target:  5'- uCGCCUcgGUCGCgaccaaccGGAcgCGAuCUcCGAGCCc -3'
miRNA:   3'- -GCGGAa-CAGCG--------UCUa-GCU-GA-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 15179 0.66 0.899835
Target:  5'- aGCCgUGgUGCGGAUUccagcugGACUCGcACCa -3'
miRNA:   3'- gCGGaACaGCGUCUAG-------CUGAGCuUGG- -5'
16250 5' -52 NC_004084.1 + 37217 0.66 0.89633
Target:  5'- cCGCCgaUGuacuggaugauccgaUCGguGAUCGugUCGAugUc -3'
miRNA:   3'- -GCGGa-AC---------------AGCguCUAGCugAGCUugG- -5'
16250 5' -52 NC_004084.1 + 8283 0.66 0.886158
Target:  5'- aCGaCCUcGucauccggacgaUCGCGGGccUCGACUCGAaguACCg -3'
miRNA:   3'- -GC-GGAaC------------AGCGUCU--AGCUGAGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 12023 0.66 0.886158
Target:  5'- uCGCC--GUCGCcGAucgUCGAUUCGA-CCu -3'
miRNA:   3'- -GCGGaaCAGCGuCU---AGCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 53187 0.66 0.886158
Target:  5'- aGCCaacUUGUCGagucuuccguGAUCGuCUCGAGCg -3'
miRNA:   3'- gCGG---AACAGCgu--------CUAGCuGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 14738 0.66 0.886158
Target:  5'- gCGCCcguccGUCGCAGGcacUCGGCgCGGuagGCCc -3'
miRNA:   3'- -GCGGaa---CAGCGUCU---AGCUGaGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 47047 0.66 0.886158
Target:  5'- uGCCagggUGcucgaaUCGUGuGcUCGACUCGAACCg -3'
miRNA:   3'- gCGGa---AC------AGCGU-CuAGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 20850 0.67 0.878576
Target:  5'- uCGCCgaggGUgGCAcGUCGAC-CGcGCCg -3'
miRNA:   3'- -GCGGaa--CAgCGUcUAGCUGaGCuUGG- -5'
16250 5' -52 NC_004084.1 + 39325 0.67 0.878576
Target:  5'- cCGCCgcggUGCuGAUCGACgUCGAcguagacgGCCg -3'
miRNA:   3'- -GCGGaacaGCGuCUAGCUG-AGCU--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.