miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 5' -52 NC_004084.1 + 57871 1.04 0.006091
Target:  5'- cCGCCUUGUCGCAG-UCGACUCGAACCg -3'
miRNA:   3'- -GCGGAACAGCGUCuAGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 53233 0.75 0.44844
Target:  5'- cCGCCUcgucuacccaGUCGUcGAUCGACUCGAgugcuGCCu -3'
miRNA:   3'- -GCGGAa---------CAGCGuCUAGCUGAGCU-----UGG- -5'
16250 5' -52 NC_004084.1 + 47137 0.74 0.488902
Target:  5'- uCGCCcucacUGUU-CAGGUCGAgCUCGAACCg -3'
miRNA:   3'- -GCGGa----ACAGcGUCUAGCU-GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 4191 0.73 0.520338
Target:  5'- uCGCUccgacGUCG-AGAUcCGACUCGAGCCg -3'
miRNA:   3'- -GCGGaa---CAGCgUCUA-GCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 18575 0.73 0.530994
Target:  5'- gCGCCgcgGcCGCcGAUgGACUCGAGCg -3'
miRNA:   3'- -GCGGaa-CaGCGuCUAgCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 10244 0.73 0.541729
Target:  5'- uCGCCUggugaGUCGCGG-UCGGCgucCGGAUCa -3'
miRNA:   3'- -GCGGAa----CAGCGUCuAGCUGa--GCUUGG- -5'
16250 5' -52 NC_004084.1 + 38874 0.72 0.622859
Target:  5'- aGCCagaGUUGCGGGaagaagacagcgucuUCGAgCUCGAACCg -3'
miRNA:   3'- gCGGaa-CAGCGUCU---------------AGCU-GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 397 0.71 0.662716
Target:  5'- cCGCCgaUGUCGCAGAcgucgUCGAUcUGGACg -3'
miRNA:   3'- -GCGGa-ACAGCGUCU-----AGCUGaGCUUGg -5'
16250 5' -52 NC_004084.1 + 53406 0.7 0.684727
Target:  5'- aGCCcgUUGauccccUCuCGGAUCGACUCGAGCg -3'
miRNA:   3'- gCGG--AAC------AGcGUCUAGCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 39554 0.7 0.684727
Target:  5'- gGCCag--CGC-GAUCGACUCGA-CCg -3'
miRNA:   3'- gCGGaacaGCGuCUAGCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 9404 0.7 0.706535
Target:  5'- aCGUCgUGUCGguCAcGAUCGACaCGGACCg -3'
miRNA:   3'- -GCGGaACAGC--GU-CUAGCUGaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 12440 0.7 0.728047
Target:  5'- aCGCCgUGacgacCGCAGGagcCGACUCGGACa -3'
miRNA:   3'- -GCGGaACa----GCGUCUa--GCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 42715 0.69 0.749171
Target:  5'- aCGaCCcUGUCGCGucggcgaguuGAUCGGCUgCGAGCg -3'
miRNA:   3'- -GC-GGaACAGCGU----------CUAGCUGA-GCUUGg -5'
16250 5' -52 NC_004084.1 + 11599 0.69 0.759559
Target:  5'- uCGCCgcagUUGUCGCAGGUcgCGACguugCuGGCCu -3'
miRNA:   3'- -GCGG----AACAGCGUCUA--GCUGa---GcUUGG- -5'
16250 5' -52 NC_004084.1 + 57630 0.69 0.759559
Target:  5'- uCGUCUcgagGUCGCGcGUCGcCUCGAcgaGCCg -3'
miRNA:   3'- -GCGGAa---CAGCGUcUAGCuGAGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 8139 0.69 0.779924
Target:  5'- aCGCCUgGUCgGCAGAcgUCGAggacCUCGccGCCa -3'
miRNA:   3'- -GCGGAaCAG-CGUCU--AGCU----GAGCu-UGG- -5'
16250 5' -52 NC_004084.1 + 29244 0.69 0.78988
Target:  5'- aGUaCUcGUCGCGcc-CGGCUCGAACCa -3'
miRNA:   3'- gCG-GAaCAGCGUcuaGCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 3910 0.68 0.798698
Target:  5'- uGCCg-GUUGUAGucGUCGAaggcgucCUCGAACCg -3'
miRNA:   3'- gCGGaaCAGCGUC--UAGCU-------GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 45455 0.68 0.799669
Target:  5'- aCGCCgcc-CGCgAGAUCGAagcCGAGCCu -3'
miRNA:   3'- -GCGGaacaGCG-UCUAGCUga-GCUUGG- -5'
16250 5' -52 NC_004084.1 + 39277 0.68 0.827928
Target:  5'- uCGUCgaucgcGUCGCGGAcUCGAUcgUCGAGCa -3'
miRNA:   3'- -GCGGaa----CAGCGUCU-AGCUG--AGCUUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.