miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 46874 0.66 0.694358
Target:  5'- cGUUugCG-UCG-GCuGCCGCCAcgCCc -3'
miRNA:   3'- cCAGugGCuAGCuCGuCGGCGGUa-GG- -5'
16253 3' -56.4 NC_004084.1 + 41800 0.69 0.513519
Target:  5'- cGUCACgauCGAccUCGAGgAGcCCGCCggGUCCg -3'
miRNA:   3'- cCAGUG---GCU--AGCUCgUC-GGCGG--UAGG- -5'
16253 3' -56.4 NC_004084.1 + 514 0.68 0.544662
Target:  5'- cGGUCGgacuUCGAU-GAGCGGuUCGCCcgCCg -3'
miRNA:   3'- -CCAGU----GGCUAgCUCGUC-GGCGGuaGG- -5'
16253 3' -56.4 NC_004084.1 + 57127 0.68 0.555182
Target:  5'- -aUCACUcAUCGAGCgAGCCgGgCAUCCc -3'
miRNA:   3'- ccAGUGGcUAGCUCG-UCGG-CgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 54124 0.68 0.576392
Target:  5'- aGGUCGCCG-UCGGcuucCAGCaccugaCGCCGUUCg -3'
miRNA:   3'- -CCAGUGGCuAGCUc---GUCG------GCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 38975 0.67 0.608515
Target:  5'- -uUCACCGAgUCGAcaAGCCGCCuuAUCg -3'
miRNA:   3'- ccAGUGGCU-AGCUcgUCGGCGG--UAGg -5'
16253 3' -56.4 NC_004084.1 + 42259 0.67 0.619274
Target:  5'- uGGUCGagUGAugcUCGAGCAGCgCGaCCA-CCg -3'
miRNA:   3'- -CCAGUg-GCU---AGCUCGUCG-GC-GGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 16621 0.67 0.631119
Target:  5'- cGGUCuguggaagACCGAUCuuuucggggcggguGAcGCAGCCGCUggagugcuugguagaAUCCg -3'
miRNA:   3'- -CCAG--------UGGCUAG--------------CU-CGUCGGCGG---------------UAGG- -5'
16253 3' -56.4 NC_004084.1 + 51215 0.67 0.640813
Target:  5'- gGGcUACUGGgcguggugcgUCGAGCAGCuCGaCGUCCg -3'
miRNA:   3'- -CCaGUGGCU----------AGCUCGUCG-GCgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 33738 0.69 0.513519
Target:  5'- -uUCGCCag-CGAGCGGCagCGCUGUCCc -3'
miRNA:   3'- ccAGUGGcuaGCUCGUCG--GCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 23837 0.69 0.513519
Target:  5'- cGUCG-CGAUgGAgGCAGUCGCCG-CCa -3'
miRNA:   3'- cCAGUgGCUAgCU-CGUCGGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 49188 0.7 0.483131
Target:  5'- uGGaCGCCcuGAUCGAGCAG--GUCAUCCa -3'
miRNA:   3'- -CCaGUGG--CUAGCUCGUCggCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 47337 0.78 0.160693
Target:  5'- cGUCGCCGAccucaagcacauguUCGucGGCGGCCGCCccuucGUCCg -3'
miRNA:   3'- cCAGUGGCU--------------AGC--UCGUCGGCGG-----UAGG- -5'
16253 3' -56.4 NC_004084.1 + 21583 0.77 0.170873
Target:  5'- cGUCACCGAUgcaaccggCGAGCAGCUGgaCCGUCUc -3'
miRNA:   3'- cCAGUGGCUA--------GCUCGUCGGC--GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 28324 0.75 0.222075
Target:  5'- --gCACC--UCGAGCucGCCGCCGUCCu -3'
miRNA:   3'- ccaGUGGcuAGCUCGu-CGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 47908 0.75 0.245974
Target:  5'- cGGUCGCUccgCGAGguGCCGCgCgAUCCa -3'
miRNA:   3'- -CCAGUGGcuaGCUCguCGGCG-G-UAGG- -5'
16253 3' -56.4 NC_004084.1 + 22436 0.74 0.278111
Target:  5'- cGGUCggagacgaGCUGAUCGAGUcgggacuggucacGGCCGCCGaCCc -3'
miRNA:   3'- -CCAG--------UGGCUAGCUCG-------------UCGGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 42726 0.73 0.32268
Target:  5'- cGUCACCGAUcgCGAGCAGgCGaaggaCAUCg -3'
miRNA:   3'- cCAGUGGCUA--GCUCGUCgGCg----GUAGg -5'
16253 3' -56.4 NC_004084.1 + 5560 0.71 0.397748
Target:  5'- cGG-CACCGcUCGAGCAGaUCGUCAacugCCg -3'
miRNA:   3'- -CCaGUGGCuAGCUCGUC-GGCGGUa---GG- -5'
16253 3' -56.4 NC_004084.1 + 55991 0.7 0.434523
Target:  5'- -aUCGCCGAUggCGAGCaucgcuggcgAGCCGCCAa-- -3'
miRNA:   3'- ccAGUGGCUA--GCUCG----------UCGGCGGUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.