miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 16688 0.67 0.717229
Target:  5'- aGCGGgGCCUCgaCGUUGG-UCgCGAUCg -3'
miRNA:   3'- -UGCUgCGGAGgaGCAGCUaAG-GCUGG- -5'
16259 3' -55.4 NC_004084.1 + 12026 0.69 0.599688
Target:  5'- cCGuCGCCga-UCGUCGAUU-CGACCu -3'
miRNA:   3'- uGCuGCGGaggAGCAGCUAAgGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 47037 0.69 0.610424
Target:  5'- gACGAUGCCggggagugCC-CGgacugCGGUUCUGACUg -3'
miRNA:   3'- -UGCUGCGGa-------GGaGCa----GCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 5478 0.68 0.621177
Target:  5'- gACGACGCCgacggCCagaUCGUCGcagUCGACg -3'
miRNA:   3'- -UGCUGCGGa----GG---AGCAGCuaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 22510 0.68 0.653455
Target:  5'- aACcGCGUCaUCCUCGacgaCGAUcgccUCCGGCCg -3'
miRNA:   3'- -UGcUGCGG-AGGAGCa---GCUA----AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 3074 0.67 0.70674
Target:  5'- uCGACggGCCg-CUCGUCGAcgugcgUUCCGGCg -3'
miRNA:   3'- uGCUG--CGGagGAGCAGCU------AAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 54410 0.67 0.70674
Target:  5'- uCGACGCCUCaugUCuacCGAUUCCcACCc -3'
miRNA:   3'- uGCUGCGGAGg--AGca-GCUAAGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 58198 0.67 0.70674
Target:  5'- aACGACGaCUCCccCGcCGAUggCCGugCg -3'
miRNA:   3'- -UGCUGCgGAGGa-GCaGCUAa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 56876 0.67 0.717229
Target:  5'- uCGACgGCCgugCCUCgGUCcAgaCCGACCg -3'
miRNA:   3'- uGCUG-CGGa--GGAG-CAGcUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 21895 0.69 0.575112
Target:  5'- cGCGAUcggcgucucggucgGCCUCCUCaUCGAgUUCGACg -3'
miRNA:   3'- -UGCUG--------------CGGAGGAGcAGCUaAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 56932 0.69 0.567674
Target:  5'- gGCGACGUCUaCCaggaggUCGUCGAUcgCCGcAUCa -3'
miRNA:   3'- -UGCUGCGGA-GG------AGCAGCUAa-GGC-UGG- -5'
16259 3' -55.4 NC_004084.1 + 27033 0.69 0.567674
Target:  5'- uCGGCGUagUCCgcccCGUCGAgUUCGACCa -3'
miRNA:   3'- uGCUGCGg-AGGa---GCAGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 3812 0.72 0.445826
Target:  5'- aACGGCGaCCucgauccagUCUUCGUCGAcgCCGACg -3'
miRNA:   3'- -UGCUGC-GG---------AGGAGCAGCUaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 9500 0.71 0.455454
Target:  5'- cCGGCGCCgaCCggaaGUCGuggCCGACCg -3'
miRNA:   3'- uGCUGCGGa-GGag--CAGCuaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 37323 0.71 0.465194
Target:  5'- gACGACGCUgaacgCUUCGgCGAUcCCGACg -3'
miRNA:   3'- -UGCUGCGGa----GGAGCaGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 1871 0.71 0.466173
Target:  5'- gACGuCGCCUCCUggacugccacgccaaGUCGGggauggggCCGACCg -3'
miRNA:   3'- -UGCuGCGGAGGAg--------------CAGCUaa------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 57086 0.7 0.515407
Target:  5'- cCGACGgaguaCUCCUaCGUCGAgcgCCGugCu -3'
miRNA:   3'- uGCUGCg----GAGGA-GCAGCUaa-GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 57524 0.7 0.52572
Target:  5'- gACGACGCCgacagCGauacCGAUUCCGACg -3'
miRNA:   3'- -UGCUGCGGagga-GCa---GCUAAGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 35341 0.7 0.546569
Target:  5'- cCGACGUCcaCCUCGUCGcgucgCCGGCg -3'
miRNA:   3'- uGCUGCGGa-GGAGCAGCuaa--GGCUGg -5'
16259 3' -55.4 NC_004084.1 + 35051 0.7 0.546569
Target:  5'- cGCGACGgaUCCgaaCGUCGAcgUCGACCc -3'
miRNA:   3'- -UGCUGCggAGGa--GCAGCUaaGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.