miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16261 5' -55.6 NC_004084.1 + 25461 0.68 0.624964
Target:  5'- cGUGGcUUCgaGGUUCGcggGCGGCGUCAGa -3'
miRNA:   3'- cUACC-AGG--UCGAGCa--UGCCGCAGUCc -5'
16261 5' -55.6 NC_004084.1 + 52595 0.68 0.624964
Target:  5'- cGUGGUCCGGUgggucgaggcagUCGacacgccCGGCGUCGGa -3'
miRNA:   3'- cUACCAGGUCG------------AGCau-----GCCGCAGUCc -5'
16261 5' -55.6 NC_004084.1 + 9698 0.66 0.732373
Target:  5'- aGGUGGUCCuugcuGCUCGaaaGGaCGUCGccGGa -3'
miRNA:   3'- -CUACCAGGu----CGAGCaugCC-GCAGU--CC- -5'
16261 5' -55.6 NC_004084.1 + 53041 0.66 0.732373
Target:  5'- ---aGUCCGGCUgGcACGGCGUCc-- -3'
miRNA:   3'- cuacCAGGUCGAgCaUGCCGCAGucc -5'
16261 5' -55.6 NC_004084.1 + 29754 0.66 0.753025
Target:  5'- ---cGUUgAGCUCGcUGCGGCGgUAGGu -3'
miRNA:   3'- cuacCAGgUCGAGC-AUGCCGCaGUCC- -5'
16261 5' -55.6 NC_004084.1 + 7938 0.72 0.373921
Target:  5'- --cGGUCaguuGCUCGUGCGGCGUUc-- -3'
miRNA:   3'- cuaCCAGgu--CGAGCAUGCCGCAGucc -5'
16261 5' -55.6 NC_004084.1 + 45030 0.7 0.477057
Target:  5'- --cGGUUCAGCUCGaACuGGCGcUCGGa -3'
miRNA:   3'- cuaCCAGGUCGAGCaUG-CCGC-AGUCc -5'
16261 5' -55.6 NC_004084.1 + 49678 0.69 0.570848
Target:  5'- gGGUGGUCCG--UCGUcuCGGUGUCGGa -3'
miRNA:   3'- -CUACCAGGUcgAGCAu-GCCGCAGUCc -5'
16261 5' -55.6 NC_004084.1 + 45964 0.68 0.603237
Target:  5'- cGAUGuGUCCgagucGGCUCcUGCGGuCGUCAcGGc -3'
miRNA:   3'- -CUAC-CAGG-----UCGAGcAUGCC-GCAGU-CC- -5'
16261 5' -55.6 NC_004084.1 + 39398 0.67 0.689981
Target:  5'- ---aGUCCAGUUCGagcuCGGCGUCGu- -3'
miRNA:   3'- cuacCAGGUCGAGCau--GCCGCAGUcc -5'
16261 5' -55.6 NC_004084.1 + 52510 1.1 0.000861
Target:  5'- uGAUGGUCCAGCUCGUACGGCGUCAGGa -3'
miRNA:   3'- -CUACCAGGUCGAGCAUGCCGCAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.