miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16263 3' -57.5 NC_004084.1 + 57811 0.69 0.449441
Target:  5'- aGCUUcaacgaucaacUCGAGGGCGUCCUCaCCGaAGAg -3'
miRNA:   3'- aCGGA-----------AGCUCUUGCAGGGGcGGC-UCU- -5'
16263 3' -57.5 NC_004084.1 + 57109 0.7 0.385181
Target:  5'- cGCCUcgauccagUCGAGGACGUCCUcgguguCGCCGu-- -3'
miRNA:   3'- aCGGA--------AGCUCUUGCAGGG------GCGGCucu -5'
16263 3' -57.5 NC_004084.1 + 55234 0.67 0.539911
Target:  5'- cGCC-UCGuucACGUCCUCGCCGucGAc -3'
miRNA:   3'- aCGGaAGCucuUGCAGGGGCGGCu-CU- -5'
16263 3' -57.5 NC_004084.1 + 53434 0.73 0.262714
Target:  5'- aUGCC--CGAGuGgGUCCCCGCCGAu- -3'
miRNA:   3'- -ACGGaaGCUCuUgCAGGGGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 53340 0.69 0.459098
Target:  5'- cGUCUUCGAGGuggacuGCGUCgucuacUCCGCCGAc- -3'
miRNA:   3'- aCGGAAGCUCU------UGCAG------GGGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 53269 0.66 0.614234
Target:  5'- cUGCCUcaGGGAcgACGUCggucgCCaCGCCGAGGu -3'
miRNA:   3'- -ACGGAagCUCU--UGCAG-----GG-GCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 51629 1.08 0.000786
Target:  5'- uUGCCUUCGAGAACGUCCCCGCCGAGAc -3'
miRNA:   3'- -ACGGAAGCUCUUGCAGGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 51422 0.68 0.519183
Target:  5'- gGCCUUCGAGGGCGaCa-CGCUGAu- -3'
miRNA:   3'- aCGGAAGCUCUUGCaGggGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 50948 0.66 0.603506
Target:  5'- cGCCUUCGc---CGUCgCCGCuCGAGu -3'
miRNA:   3'- aCGGAAGCucuuGCAGgGGCG-GCUCu -5'
16263 3' -57.5 NC_004084.1 + 46107 0.72 0.319574
Target:  5'- cGuUCUUCGAGAcCGUuucUCCCGCUGGGAg -3'
miRNA:   3'- aC-GGAAGCUCUuGCA---GGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 43740 0.66 0.64647
Target:  5'- gGCCaaUCGAGGA---CCCgGCCGGGAc -3'
miRNA:   3'- aCGGa-AGCUCUUgcaGGGgCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 42406 0.66 0.64647
Target:  5'- cGUCUUUGAGcucguuGAgGUCCCCGuuG-GAu -3'
miRNA:   3'- aCGGAAGCUC------UUgCAGGGGCggCuCU- -5'
16263 3' -57.5 NC_004084.1 + 41256 0.68 0.508937
Target:  5'- cGCCUUCGAcgucgccggcGAuCGUCCCCaucagugaaccGCCGAc- -3'
miRNA:   3'- aCGGAAGCU----------CUuGCAGGGG-----------CGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 39428 0.71 0.359563
Target:  5'- cGCCagCGGGAccuACGacuUCCCCGCCGGc- -3'
miRNA:   3'- aCGGaaGCUCU---UGC---AGGGGCGGCUcu -5'
16263 3' -57.5 NC_004084.1 + 37653 0.66 0.614234
Target:  5'- aGCCUUCGuccuCGUCUCCGgUGGGc -3'
miRNA:   3'- aCGGAAGCucuuGCAGGGGCgGCUCu -5'
16263 3' -57.5 NC_004084.1 + 36243 0.7 0.385181
Target:  5'- cGCCUacCGGGucGACGUCCUcgagugCGCCGAGGc -3'
miRNA:   3'- aCGGAa-GCUC--UUGCAGGG------GCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 35926 0.66 0.64647
Target:  5'- cGCgUUcaCGAGcAUGUCCCCggcgucGCCGGGGu -3'
miRNA:   3'- aCGgAA--GCUCuUGCAGGGG------CGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 33226 0.66 0.614234
Target:  5'- gGCCgagCGGGc-CGUCCCCuaCGAGu -3'
miRNA:   3'- aCGGaa-GCUCuuGCAGGGGcgGCUCu -5'
16263 3' -57.5 NC_004084.1 + 30437 0.68 0.519183
Target:  5'- aGCgauggCGAGGACGacgUCCCGCUGGGGa -3'
miRNA:   3'- aCGgaa--GCUCUUGCa--GGGGCGGCUCU- -5'
16263 3' -57.5 NC_004084.1 + 29073 0.71 0.327298
Target:  5'- cGCCcgcUCGGGGGCGUCgUCGCCGcGGu -3'
miRNA:   3'- aCGGa--AGCUCUUGCAGgGGCGGCuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.