Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 54143 | 0.78 | 0.166222 |
Target: 5'- -gCACCUG-ACGCCgUUCGCGUCGAAg -3' miRNA: 3'- agGUGGGCuUGCGG-AAGCGCAGCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 20234 | 0.66 | 0.763176 |
Target: 5'- gUCAUUCGAgaugACGCCga-GCGUCGAu- -3' miRNA: 3'- aGGUGGGCU----UGCGGaagCGCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 48024 | 0.66 | 0.753025 |
Target: 5'- aCgACCUGGACGacgaCgagcUCGaCGUCGAACu -3' miRNA: 3'- aGgUGGGCUUGCg---Ga---AGC-GCAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 45757 | 0.66 | 0.753025 |
Target: 5'- gUCCGCUCGAucgggACGCCgauggaggUCauguggGCGUaCGAACg -3' miRNA: 3'- -AGGUGGGCU-----UGCGGa-------AG------CGCA-GCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 35192 | 0.66 | 0.753025 |
Target: 5'- gCCGCUCGAGCuCCUccgaaucgUCGgGaUCGAGCc -3' miRNA: 3'- aGGUGGGCUUGcGGA--------AGCgC-AGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 39349 | 0.66 | 0.732373 |
Target: 5'- aCCAUCCGAACcuGCCcgUUCGUGa-GGACg -3' miRNA: 3'- aGGUGGGCUUG--CGG--AAGCGCagCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 50295 | 0.66 | 0.721895 |
Target: 5'- gCUACCCGAguaACGaCCacUCGC-UCGAGCc -3' miRNA: 3'- aGGUGGGCU---UGC-GGa-AGCGcAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 57387 | 0.67 | 0.700688 |
Target: 5'- --aACUCGAgcGCGCCcccgaUCGCGUCGAc- -3' miRNA: 3'- aggUGGGCU--UGCGGa----AGCGCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 35327 | 0.67 | 0.674902 |
Target: 5'- gCUAUCCGAGguCGCCgacguccaccucgUCGCGUCGccGGCg -3' miRNA: 3'- aGGUGGGCUU--GCGGa------------AGCGCAGC--UUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 27064 | 0.67 | 0.657577 |
Target: 5'- gUCCAgcaacgaacuuUCCGAcCGCCaUCGCGacgucUCGGACg -3' miRNA: 3'- -AGGU-----------GGGCUuGCGGaAGCGC-----AGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 43674 | 0.72 | 0.417072 |
Target: 5'- aCCGCgCCGAGUGCCUgcgacggacgggCGCGUCGAc- -3' miRNA: 3'- aGGUG-GGCUUGCGGAa-----------GCGCAGCUug -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 17026 | 0.7 | 0.497309 |
Target: 5'- aUCCGCgaCCGAGCGUCUgCGCccGUCGAuGCg -3' miRNA: 3'- -AGGUG--GGCUUGCGGAaGCG--CAGCU-UG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 35853 | 0.69 | 0.549486 |
Target: 5'- aUCGgCCGAACGCCga---GUCGAACa -3' miRNA: 3'- aGGUgGGCUUGCGGaagcgCAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 9174 | 0.68 | 0.614093 |
Target: 5'- gCCGCUCGA--GCCUUCGgaUGUCGAGu -3' miRNA: 3'- aGGUGGGCUugCGGAAGC--GCAGCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 23856 | 0.68 | 0.614093 |
Target: 5'- gCCGCCa--GCGCCcUCGCGaUGGACg -3' miRNA: 3'- aGGUGGgcuUGCGGaAGCGCaGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 54020 | 0.68 | 0.646715 |
Target: 5'- aCCaaaGCCCGAAuuCGCCUUCGaCGa-GGACg -3' miRNA: 3'- aGG---UGGGCUU--GCGGAAGC-GCagCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 22255 | 0.67 | 0.657577 |
Target: 5'- cUCaACCCGGACGUCgacgUCGauccaGUCGAGg -3' miRNA: 3'- -AGgUGGGCUUGCGGa---AGCg----CAGCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 49205 | 1.11 | 0.000913 |
Target: 5'- cUCCACCCGAACGCCUUCGCGUCGAACg -3' miRNA: 3'- -AGGUGGGCUUGCGGAAGCGCAGCUUG- -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 52474 | 0.66 | 0.753025 |
Target: 5'- aUCGCCUGGACGCCgUCGgGauagaCGAAg -3' miRNA: 3'- aGGUGGGCUUGCGGaAGCgCa----GCUUg -5' |
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16266 | 3' | -55.4 | NC_004084.1 | + | 26398 | 0.66 | 0.753025 |
Target: 5'- gUCCucgaACCCGAGC-CCUUC-CGUCGcgUg -3' miRNA: 3'- -AGG----UGGGCUUGcGGAAGcGCAGCuuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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