miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16266 3' -55.4 NC_004084.1 + 9133 0.67 0.667332
Target:  5'- -aCAUCCgGAACGCCUUCGacuucgcCGUCGccguGACg -3'
miRNA:   3'- agGUGGG-CUUGCGGAAGC-------GCAGC----UUG- -5'
16266 3' -55.4 NC_004084.1 + 22255 0.67 0.657577
Target:  5'- cUCaACCCGGACGUCgacgUCGauccaGUCGAGg -3'
miRNA:   3'- -AGgUGGGCUUGCGGa---AGCg----CAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 27064 0.67 0.657577
Target:  5'- gUCCAgcaacgaacuuUCCGAcCGCCaUCGCGacgucUCGGACg -3'
miRNA:   3'- -AGGU-----------GGGCUuGCGGaAGCGC-----AGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 55856 0.68 0.646715
Target:  5'- aCgACgCGGACGUCUUCGCGgaaGAGg -3'
miRNA:   3'- aGgUGgGCUUGCGGAAGCGCag-CUUg -5'
16266 3' -55.4 NC_004084.1 + 54020 0.68 0.646715
Target:  5'- aCCaaaGCCCGAAuuCGCCUUCGaCGa-GGACg -3'
miRNA:   3'- aGG---UGGGCUU--GCGGAAGC-GCagCUUG- -5'
16266 3' -55.4 NC_004084.1 + 19647 0.68 0.635841
Target:  5'- -gCGCCCGAAgGUCgUCGUGcgucaUCGGACg -3'
miRNA:   3'- agGUGGGCUUgCGGaAGCGC-----AGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 23339 0.68 0.624964
Target:  5'- gUCACCCGuaucAGCGUCUUCcGgGUCGAc- -3'
miRNA:   3'- aGGUGGGC----UUGCGGAAG-CgCAGCUug -5'
16266 3' -55.4 NC_004084.1 + 57664 0.68 0.623876
Target:  5'- aUCgGCCUGGugguccaGCGCCUcCGaCGUCGAGa -3'
miRNA:   3'- -AGgUGGGCU-------UGCGGAaGC-GCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 25372 0.68 0.614093
Target:  5'- aUCgACgUGAGCGCCgagucagUCGagGUCGAGCu -3'
miRNA:   3'- -AGgUGgGCUUGCGGa------AGCg-CAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 23856 0.68 0.614093
Target:  5'- gCCGCCa--GCGCCcUCGCGaUGGACg -3'
miRNA:   3'- aGGUGGgcuUGCGGaAGCGCaGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 9174 0.68 0.614093
Target:  5'- gCCGCUCGA--GCCUUCGgaUGUCGAGu -3'
miRNA:   3'- aGGUGGGCUugCGGAAGC--GCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 18252 0.68 0.603237
Target:  5'- gCCAuCCCGAugACGUCUUCGaaccgGUCGAc- -3'
miRNA:   3'- aGGU-GGGCU--UGCGGAAGCg----CAGCUug -5'
16266 3' -55.4 NC_004084.1 + 48035 0.68 0.603237
Target:  5'- uUCgCGCUCGAuCGCCUgcucgacucucgUCGUucGUCGAACg -3'
miRNA:   3'- -AG-GUGGGCUuGCGGA------------AGCG--CAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 55586 0.68 0.603237
Target:  5'- aUCCACCgCGGACGCCga-G-GUUGAGg -3'
miRNA:   3'- -AGGUGG-GCUUGCGGaagCgCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 14643 0.68 0.592405
Target:  5'- cUCCGCCggCGAGCGCCcagUCGaUGcccgCGAGCg -3'
miRNA:   3'- -AGGUGG--GCUUGCGGa--AGC-GCa---GCUUG- -5'
16266 3' -55.4 NC_004084.1 + 6775 0.69 0.560139
Target:  5'- cUCCugCgGAACGCCgaaGaCGUCGGGg -3'
miRNA:   3'- -AGGugGgCUUGCGGaagC-GCAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 35853 0.69 0.549486
Target:  5'- aUCGgCCGAACGCCga---GUCGAACa -3'
miRNA:   3'- aGGUgGGCUUGCGGaagcgCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 10372 0.7 0.528378
Target:  5'- gCCGUCCGGAUGagUUCGaCGUCGAGCu -3'
miRNA:   3'- aGGUGGGCUUGCggAAGC-GCAGCUUG- -5'
16266 3' -55.4 NC_004084.1 + 40028 0.7 0.517937
Target:  5'- cCCGCCUGGACGCUUcugUGCuGUUGAAa -3'
miRNA:   3'- aGGUGGGCUUGCGGAa--GCG-CAGCUUg -5'
16266 3' -55.4 NC_004084.1 + 13460 0.7 0.507578
Target:  5'- gUCCACUcgcgaCGAACGCCguucUCGuCGaCGAACg -3'
miRNA:   3'- -AGGUGG-----GCUUGCGGa---AGC-GCaGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.