miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16271 3' -60.7 NC_004084.1 + 14386 0.66 0.480846
Target:  5'- gGCGGC-GGCGACaucaaauaCGGUgaaGGUUGGa -3'
miRNA:   3'- -UGCCGaCCGCUGg-------GUCAaggCCGACC- -5'
16271 3' -60.7 NC_004084.1 + 24001 0.66 0.480846
Target:  5'- uGCGGUUGGgGGcuCCCAGa--CGGCgaUGGa -3'
miRNA:   3'- -UGCCGACCgCU--GGGUCaagGCCG--ACC- -5'
16271 3' -60.7 NC_004084.1 + 50065 0.66 0.461537
Target:  5'- cCGGgUGGCGAuugcuCUCGaaaacgCCGGCUGGa -3'
miRNA:   3'- uGCCgACCGCU-----GGGUcaa---GGCCGACC- -5'
16271 3' -60.7 NC_004084.1 + 27371 0.66 0.442645
Target:  5'- gACGGCUGGCGcgggauucGCUcgCAGcUUCCGcuGUUGGa -3'
miRNA:   3'- -UGCCGACCGC--------UGG--GUC-AAGGC--CGACC- -5'
16271 3' -60.7 NC_004084.1 + 28899 0.66 0.442645
Target:  5'- cCGGCcGcGCGAUCgAGg-CUGGCUGGa -3'
miRNA:   3'- uGCCGaC-CGCUGGgUCaaGGCCGACC- -5'
16271 3' -60.7 NC_004084.1 + 49967 0.68 0.37173
Target:  5'- cACGGCUcGGCGACUCGucUCgCGgacGCUGGu -3'
miRNA:   3'- -UGCCGA-CCGCUGGGUcaAG-GC---CGACC- -5'
16271 3' -60.7 NC_004084.1 + 22471 0.68 0.370894
Target:  5'- gACGGCugcguggUGGCGGCuCCAGUUCgGGaCg-- -3'
miRNA:   3'- -UGCCG-------ACCGCUG-GGUCAAGgCC-Gacc -5'
16271 3' -60.7 NC_004084.1 + 24366 0.69 0.294587
Target:  5'- cGCGGUcGGUGAUaCCAGcaCCGGCUGc -3'
miRNA:   3'- -UGCCGaCCGCUG-GGUCaaGGCCGACc -5'
16271 3' -60.7 NC_004084.1 + 3689 0.69 0.286906
Target:  5'- -gGGCUGGCGuacguuCCCGGUcacaccaUCCGGaagcguaUGGa -3'
miRNA:   3'- ugCCGACCGCu-----GGGUCA-------AGGCCg------ACC- -5'
16271 3' -60.7 NC_004084.1 + 47347 1.09 0.000359
Target:  5'- aACGGCUGGCGACCCAGUUCCGGCUGGu -3'
miRNA:   3'- -UGCCGACCGCUGGGUCAAGGCCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.