miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16273 3' -50.8 NC_004084.1 + 44819 0.66 0.938916
Target:  5'- cCGGUCggugaCGGUAUCGAgcugaccgaGGUCggaUCGGCc -3'
miRNA:   3'- uGCUAGa----GCCGUAGCU---------UCAGa--AGCUG- -5'
16273 3' -50.8 NC_004084.1 + 46401 0.66 0.92787
Target:  5'- gACGA--UCGGCGacggCGAAGUUgUUGACg -3'
miRNA:   3'- -UGCUagAGCCGUa---GCUUCAGaAGCUG- -5'
16273 3' -50.8 NC_004084.1 + 56450 0.66 0.92787
Target:  5'- gACGAUCUcgaCGGCGcgcUCucGGUCUUCcguGACg -3'
miRNA:   3'- -UGCUAGA---GCCGU---AGcuUCAGAAG---CUG- -5'
16273 3' -50.8 NC_004084.1 + 26895 0.66 0.921299
Target:  5'- gGCGAUCgCGGCAUCcaucgcgauagugGAGG-CggCGACu -3'
miRNA:   3'- -UGCUAGaGCCGUAG-------------CUUCaGaaGCUG- -5'
16273 3' -50.8 NC_004084.1 + 21895 0.66 0.918197
Target:  5'- cGCGA--UCGGCGUCucGGUCggccuccucaucgagUUCGACg -3'
miRNA:   3'- -UGCUagAGCCGUAGcuUCAG---------------AAGCUG- -5'
16273 3' -50.8 NC_004084.1 + 21771 0.66 0.915663
Target:  5'- -gGAUCggCGGCAUCGAcGUCgg-GGCc -3'
miRNA:   3'- ugCUAGa-GCCGUAGCUuCAGaagCUG- -5'
16273 3' -50.8 NC_004084.1 + 29394 0.66 0.915663
Target:  5'- aACGGUCgggCGGCcacuccuggggcGUCGcGGUUgccgUCGACg -3'
miRNA:   3'- -UGCUAGa--GCCG------------UAGCuUCAGa---AGCUG- -5'
16273 3' -50.8 NC_004084.1 + 53319 0.67 0.909127
Target:  5'- gGCGAUCgcgGGC-UCGGuucacGUCUUCGAg -3'
miRNA:   3'- -UGCUAGag-CCGuAGCUu----CAGAAGCUg -5'
16273 3' -50.8 NC_004084.1 + 48709 0.67 0.909127
Target:  5'- cCGGcaUCGGCGUCGGccaacucaccgcGGUCUcCGGCg -3'
miRNA:   3'- uGCUagAGCCGUAGCU------------UCAGAaGCUG- -5'
16273 3' -50.8 NC_004084.1 + 50166 0.67 0.902304
Target:  5'- gAUGucGUCagCGGCGUCGAucGUC-UCGACg -3'
miRNA:   3'- -UGC--UAGa-GCCGUAGCUu-CAGaAGCUG- -5'
16273 3' -50.8 NC_004084.1 + 36901 0.67 0.902304
Target:  5'- gGCGAaCUCGGCggCGAAcgUUUCGAa -3'
miRNA:   3'- -UGCUaGAGCCGuaGCUUcaGAAGCUg -5'
16273 3' -50.8 NC_004084.1 + 18774 0.67 0.902304
Target:  5'- cGCGAguucCUCGGCGUCGc-GUacgaUCGACu -3'
miRNA:   3'- -UGCUa---GAGCCGUAGCuuCAga--AGCUG- -5'
16273 3' -50.8 NC_004084.1 + 14 0.67 0.895198
Target:  5'- -gGGUCuUCGaaGUCGAGGUCgugUCGGCc -3'
miRNA:   3'- ugCUAG-AGCcgUAGCUUCAGa--AGCUG- -5'
16273 3' -50.8 NC_004084.1 + 7181 0.67 0.887813
Target:  5'- aGCGAUC-CGGaCGUCGAg--CUgcUCGACg -3'
miRNA:   3'- -UGCUAGaGCC-GUAGCUucaGA--AGCUG- -5'
16273 3' -50.8 NC_004084.1 + 45282 0.67 0.880154
Target:  5'- cCGaAUCgUCGcCGUCGAAGUCUUCGuCc -3'
miRNA:   3'- uGC-UAG-AGCcGUAGCUUCAGAAGCuG- -5'
16273 3' -50.8 NC_004084.1 + 52940 0.68 0.872228
Target:  5'- gACGAUCuggccgUCGGCGUCGucGUgaUCGuCg -3'
miRNA:   3'- -UGCUAG------AGCCGUAGCuuCAgaAGCuG- -5'
16273 3' -50.8 NC_004084.1 + 16875 0.68 0.871421
Target:  5'- -gGAUCUCGaGCG-CGgcGUCUgcuccgaUCGACg -3'
miRNA:   3'- ugCUAGAGC-CGUaGCuuCAGA-------AGCUG- -5'
16273 3' -50.8 NC_004084.1 + 9594 0.68 0.86404
Target:  5'- aGCGAUCauUCGGC-UCGuacgugcgcGUCUUCGAg -3'
miRNA:   3'- -UGCUAG--AGCCGuAGCuu-------CAGAAGCUg -5'
16273 3' -50.8 NC_004084.1 + 26254 0.68 0.86404
Target:  5'- gGCGucCUCGGCGUUGAucaucGUCUcgugCGACg -3'
miRNA:   3'- -UGCuaGAGCCGUAGCUu----CAGAa---GCUG- -5'
16273 3' -50.8 NC_004084.1 + 3806 0.68 0.855599
Target:  5'- aACGGUaaCGGCGaccUCGAuccAGUCUucgUCGACg -3'
miRNA:   3'- -UGCUAgaGCCGU---AGCU---UCAGA---AGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.