miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16273 5' -51.7 NC_004084.1 + 15721 0.66 0.911824
Target:  5'- gGGUCGUcAGCaUCGGUgAUCGCUGgCAg -3'
miRNA:   3'- gCCAGCAcUUG-AGCUA-UAGCGGCaGU- -5'
16273 5' -51.7 NC_004084.1 + 32097 0.67 0.891207
Target:  5'- aCGGaUGgacGAGCUCGAgcagcUCGUCGUCGa -3'
miRNA:   3'- -GCCaGCa--CUUGAGCUau---AGCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 54372 0.67 0.883794
Target:  5'- gCGGUCGgcaGAucACUCuGAcgcgAUCGCCGUUc -3'
miRNA:   3'- -GCCAGCa--CU--UGAG-CUa---UAGCGGCAGu -5'
16273 5' -51.7 NC_004084.1 + 956 0.67 0.883794
Target:  5'- aGGUCGcGGGCcaucucgcggUCGGUGUCGCUGa-- -3'
miRNA:   3'- gCCAGCaCUUG----------AGCUAUAGCGGCagu -5'
16273 5' -51.7 NC_004084.1 + 5142 0.67 0.876118
Target:  5'- uGGUCGccaGGACgucgcccggccCGAUcucGUCGCCGUCGa -3'
miRNA:   3'- gCCAGCa--CUUGa----------GCUA---UAGCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 18618 0.67 0.868187
Target:  5'- ----gGUGGGCUCGAaGUCGCCGa-- -3'
miRNA:   3'- gccagCACUUGAGCUaUAGCGGCagu -5'
16273 5' -51.7 NC_004084.1 + 45274 0.67 0.860006
Target:  5'- uCGGUCGUccGAA-UCG---UCGCCGUCGa -3'
miRNA:   3'- -GCCAGCA--CUUgAGCuauAGCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 27794 0.68 0.851583
Target:  5'- -cGUCGcGAACUCGuaGUCGgCGUCGa -3'
miRNA:   3'- gcCAGCaCUUGAGCuaUAGCgGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 54112 0.68 0.851583
Target:  5'- aGGUC----ACUCGccagGUCGCCGUCGg -3'
miRNA:   3'- gCCAGcacuUGAGCua--UAGCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 38725 0.68 0.842927
Target:  5'- -aGUCGUGGgaguGCUCGGUGaacgcgaUGCCGUCGa -3'
miRNA:   3'- gcCAGCACU----UGAGCUAUa------GCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 17959 0.68 0.824947
Target:  5'- aGGccgUGUGGACgucgUCGGUGUCGCCcUCGg -3'
miRNA:   3'- gCCa--GCACUUG----AGCUAUAGCGGcAGU- -5'
16273 5' -51.7 NC_004084.1 + 14032 0.68 0.819389
Target:  5'- gCGcUCGUGGACaUCGGUGuucaggaggugucgcUCGCCGUUg -3'
miRNA:   3'- -GCcAGCACUUG-AGCUAU---------------AGCGGCAGu -5'
16273 5' -51.7 NC_004084.1 + 5487 0.68 0.815643
Target:  5'- cCGGUCGUGAcgcGCUCGGcGUaUGCC-UCGa -3'
miRNA:   3'- -GCCAGCACU---UGAGCUaUA-GCGGcAGU- -5'
16273 5' -51.7 NC_004084.1 + 50957 0.69 0.776576
Target:  5'- -cGUCGcc-GCUCGA-GUCGCCGUCGg -3'
miRNA:   3'- gcCAGCacuUGAGCUaUAGCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 6876 0.69 0.766401
Target:  5'- cCGGUCGUGGAUgccgagguacgUCGggAUCGCgacCGUCu -3'
miRNA:   3'- -GCCAGCACUUG-----------AGCuaUAGCG---GCAGu -5'
16273 5' -51.7 NC_004084.1 + 42638 0.7 0.702814
Target:  5'- aCGGUCcucaaGUGca-UCGAgAUCGCCGUCGa -3'
miRNA:   3'- -GCCAG-----CACuugAGCUaUAGCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 8280 0.7 0.702814
Target:  5'- aCGGUCGUgugcgGAACUCGGcAUC-CCGUUg -3'
miRNA:   3'- -GCCAGCA-----CUUGAGCUaUAGcGGCAGu -5'
16273 5' -51.7 NC_004084.1 + 888 0.71 0.691903
Target:  5'- -cGUCG-GAA-UCGGUAUCGCUGUCGg -3'
miRNA:   3'- gcCAGCaCUUgAGCUAUAGCGGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 9119 0.71 0.680934
Target:  5'- aGGUCaaGGACUCGAUcggCGuCCGUCGg -3'
miRNA:   3'- gCCAGcaCUUGAGCUAua-GC-GGCAGU- -5'
16273 5' -51.7 NC_004084.1 + 29395 0.72 0.607857
Target:  5'- aCGGUCGggcggccacuccugGGGCgUCGcgGUUGCCGUCGa -3'
miRNA:   3'- -GCCAGCa-------------CUUG-AGCuaUAGCGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.