miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 28283 0.66 0.841234
Target:  5'- -cUCgUGGACGGgagucUCGCGAUCGggGCGg- -3'
miRNA:   3'- caAGgACCUGCU-----AGCGCUGGU--UGCag -5'
16283 5' -53.5 NC_004084.1 + 43117 0.66 0.841234
Target:  5'- -aUCCUGGGCGGUC---AUCAcCGUCg -3'
miRNA:   3'- caAGGACCUGCUAGcgcUGGUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 41441 0.66 0.841234
Target:  5'- ---gCUGGGcCGA-CGCGAUCGAgGUCu -3'
miRNA:   3'- caagGACCU-GCUaGCGCUGGUUgCAG- -5'
16283 5' -53.5 NC_004084.1 + 35480 0.66 0.841234
Target:  5'- -gUCgaGGcgGCGAUCGCcgagaucccGACCAACGgUCg -3'
miRNA:   3'- caAGgaCC--UGCUAGCG---------CUGGUUGC-AG- -5'
16283 5' -53.5 NC_004084.1 + 12064 0.66 0.841234
Target:  5'- -gUCCUGGACGAaacccacagUUggGCGAgCGACGa- -3'
miRNA:   3'- caAGGACCUGCU---------AG--CGCUgGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 26977 0.66 0.835925
Target:  5'- ---gCUGGuCGAcagagaccagauccaUCGCGGCC-GCGUCg -3'
miRNA:   3'- caagGACCuGCU---------------AGCGCUGGuUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 22985 0.66 0.832342
Target:  5'- -gUCCUGGuCGAccUCGCGAgcgagaUCGACGa- -3'
miRNA:   3'- caAGGACCuGCU--AGCGCU------GGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 13567 0.66 0.832342
Target:  5'- -cUCCUGGAa-GUCGCgGGCCGAUccgaccucgGUCa -3'
miRNA:   3'- caAGGACCUgcUAGCG-CUGGUUG---------CAG- -5'
16283 5' -53.5 NC_004084.1 + 2844 0.66 0.823238
Target:  5'- -gUCCgcGGugGAUCGCagGACaccaucgaaGACGUCa -3'
miRNA:   3'- caAGGa-CCugCUAGCG--CUGg--------UUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 35363 0.66 0.813931
Target:  5'- --gCCgGcGACGAUCGCGaagugcGCCAagaucACGUCg -3'
miRNA:   3'- caaGGaC-CUGCUAGCGC------UGGU-----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 16660 0.66 0.813931
Target:  5'- -gUCCgGGAgGuccUCGUcGCCGGCGUCg -3'
miRNA:   3'- caAGGaCCUgCu--AGCGcUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 6123 0.66 0.812989
Target:  5'- cGUUCa-GGuCGAUgcgauucCGCGACCAGCGcCg -3'
miRNA:   3'- -CAAGgaCCuGCUA-------GCGCUGGUUGCaG- -5'
16283 5' -53.5 NC_004084.1 + 46753 0.66 0.804431
Target:  5'- -gUCCUcGcCGuagucGUCGcCGACCGACGUCg -3'
miRNA:   3'- caAGGAcCuGC-----UAGC-GCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 50813 0.66 0.804431
Target:  5'- -gUCCUGGACccguUCGCGggcGCCGGCa-- -3'
miRNA:   3'- caAGGACCUGcu--AGCGC---UGGUUGcag -5'
16283 5' -53.5 NC_004084.1 + 1237 0.66 0.804431
Target:  5'- -aUCgaGGGCGAUCGCGcCCAucuCcUCa -3'
miRNA:   3'- caAGgaCCUGCUAGCGCuGGUu--GcAG- -5'
16283 5' -53.5 NC_004084.1 + 21779 0.66 0.804431
Target:  5'- -aUCgaGGAgccguaCGAUCGCGAgccgaugcaccUCAACGUCa -3'
miRNA:   3'- caAGgaCCU------GCUAGCGCU-----------GGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 38523 0.66 0.804431
Target:  5'- -aUCgaUGGugGAUCgGCGgACCAACGa- -3'
miRNA:   3'- caAGg-ACCugCUAG-CGC-UGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 29249 0.66 0.804431
Target:  5'- aGUUCCgcUGGACGAacggcccgCGCGACCAc---- -3'
miRNA:   3'- -CAAGG--ACCUGCUa-------GCGCUGGUugcag -5'
16283 5' -53.5 NC_004084.1 + 29410 0.67 0.79475
Target:  5'- -cUCCUgGGGCG-UCGCGGuuGcCGUCg -3'
miRNA:   3'- caAGGA-CCUGCuAGCGCUggUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 6158 0.67 0.791811
Target:  5'- gGUUCCUGG-CGAUCGgGcuCCAGguggaccucgagcuCGUCu -3'
miRNA:   3'- -CAAGGACCuGCUAGCgCu-GGUU--------------GCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.