miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16284 5' -59.9 NC_004084.1 + 51200 0.66 0.517702
Target:  5'- gGUCGGCGcuGGCGCGGGCuaCUgGG-CGUg -3'
miRNA:   3'- -UAGCUGC--CCGCGUCUGc-GAgCCaGCG- -5'
16284 5' -59.9 NC_004084.1 + 16447 0.66 0.507615
Target:  5'- cAUCGguuACGGGCaUGGGCGCgagCGcaGUCGCg -3'
miRNA:   3'- -UAGC---UGCCCGcGUCUGCGa--GC--CAGCG- -5'
16284 5' -59.9 NC_004084.1 + 21479 0.66 0.497612
Target:  5'- cUCGA-GGGCgGCGauCGcCUCGGUUGCg -3'
miRNA:   3'- uAGCUgCCCG-CGUcuGC-GAGCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 29137 0.66 0.468159
Target:  5'- cUCGGCGGuGUcgGCGG-UGCUggugUGGUCGCg -3'
miRNA:   3'- uAGCUGCC-CG--CGUCuGCGA----GCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 14731 0.67 0.45854
Target:  5'- cGUCGACGcGCccguccgucGCAGGCaCUCGG-CGCg -3'
miRNA:   3'- -UAGCUGCcCG---------CGUCUGcGAGCCaGCG- -5'
16284 5' -59.9 NC_004084.1 + 13775 0.67 0.449028
Target:  5'- cUgGGCGGGCuCGGAgaucgcgucCGgUUGGUCGCg -3'
miRNA:   3'- uAgCUGCCCGcGUCU---------GCgAGCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 3180 0.67 0.449028
Target:  5'- cGUCGAC-GGCGaGGACGUgaacgaggCGGUgGCg -3'
miRNA:   3'- -UAGCUGcCCGCgUCUGCGa-------GCCAgCG- -5'
16284 5' -59.9 NC_004084.1 + 17268 0.67 0.436828
Target:  5'- aGUCGGCGaugcccucgguggaGGCGguGGCGg-CGGUgGCg -3'
miRNA:   3'- -UAGCUGC--------------CCGCguCUGCgaGCCAgCG- -5'
16284 5' -59.9 NC_004084.1 + 31409 0.67 0.421166
Target:  5'- uAUCGGCGaaguCGCAGACGacgCGGcCGCg -3'
miRNA:   3'- -UAGCUGCcc--GCGUCUGCga-GCCaGCG- -5'
16284 5' -59.9 NC_004084.1 + 37934 0.68 0.385689
Target:  5'- cGUCGGCGGGaucguCGCguuugaAGACGaCUucgcCGGUCGCc -3'
miRNA:   3'- -UAGCUGCCC-----GCG------UCUGC-GA----GCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 48502 0.68 0.383109
Target:  5'- cUCGuCGaGGCGCucuugucuuGGACGUacgccuucacgucaUCGGUCGCc -3'
miRNA:   3'- uAGCuGC-CCGCG---------UCUGCG--------------AGCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 43578 0.68 0.377134
Target:  5'- -cCGACGaGGCGCGGAUcCUCcagugGGaUCGCg -3'
miRNA:   3'- uaGCUGC-CCGCGUCUGcGAG-----CC-AGCG- -5'
16284 5' -59.9 NC_004084.1 + 29410 0.68 0.360409
Target:  5'- cUCGAUGGGCuccugcaucGCGgucaucaggccGACG-UCGGUCGCg -3'
miRNA:   3'- uAGCUGCCCG---------CGU-----------CUGCgAGCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 19983 0.69 0.352244
Target:  5'- cGUCGACGucGCGCGuuCGCUCGaGuUCGCg -3'
miRNA:   3'- -UAGCUGCc-CGCGUcuGCGAGC-C-AGCG- -5'
16284 5' -59.9 NC_004084.1 + 34938 0.69 0.328541
Target:  5'- cUCGucACGGGCGUucguGCGCUagcggcUGGUCGCg -3'
miRNA:   3'- uAGC--UGCCCGCGuc--UGCGA------GCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 16942 0.69 0.313405
Target:  5'- cAUCGGCGGGCGUcgcGACG-UCGGgucuucgagCGCc -3'
miRNA:   3'- -UAGCUGCCCGCGu--CUGCgAGCCa--------GCG- -5'
16284 5' -59.9 NC_004084.1 + 37115 0.7 0.291702
Target:  5'- gAUCG-CGGaGCGUGGugGCUucucgacgCGGUCGUu -3'
miRNA:   3'- -UAGCuGCC-CGCGUCugCGA--------GCCAGCG- -5'
16284 5' -59.9 NC_004084.1 + 6605 0.7 0.284734
Target:  5'- aGUCGGCGGGCGCGGAgGUaggacuUCaGGaacCGCc -3'
miRNA:   3'- -UAGCUGCCCGCGUCUgCG------AG-CCa--GCG- -5'
16284 5' -59.9 NC_004084.1 + 34803 0.7 0.277897
Target:  5'- cUCGACGGGC-CuGACGCUuCGaG-CGCa -3'
miRNA:   3'- uAGCUGCCCGcGuCUGCGA-GC-CaGCG- -5'
16284 5' -59.9 NC_004084.1 + 29690 0.72 0.227864
Target:  5'- -gCGACGcGGuCGCGGACGCUguccuggcUGaGUCGCg -3'
miRNA:   3'- uaGCUGC-CC-GCGUCUGCGA--------GC-CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.