miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16285 5' -50.6 NC_004084.1 + 27362 0.66 0.948108
Target:  5'- aUCGGCAcCGAcggCUGGCG-CGGGAUu -3'
miRNA:   3'- -AGUUGUaGCUauaGGCUGCuGCCCUA- -5'
16285 5' -50.6 NC_004084.1 + 57531 0.66 0.948108
Target:  5'- cCGACAgCGAUAccgauUCCGACGGCGa--- -3'
miRNA:   3'- aGUUGUaGCUAU-----AGGCUGCUGCccua -5'
16285 5' -50.6 NC_004084.1 + 11023 0.66 0.938119
Target:  5'- gUCA--GUCGAgUAUCCGGCGAucguguucgacUGGGAg -3'
miRNA:   3'- -AGUugUAGCU-AUAGGCUGCU-----------GCCCUa -5'
16285 5' -50.6 NC_004084.1 + 11853 0.66 0.938119
Target:  5'- gCGAUAUCGAguucacgaCCGACGACGauccGGAc -3'
miRNA:   3'- aGUUGUAGCUaua-----GGCUGCUGC----CCUa -5'
16285 5' -50.6 NC_004084.1 + 43791 0.66 0.938119
Target:  5'- cCGGCGgaGA-GUCCGGCGGCGaGGAg -3'
miRNA:   3'- aGUUGUagCUaUAGGCUGCUGC-CCUa -5'
16285 5' -50.6 NC_004084.1 + 47649 0.66 0.932693
Target:  5'- uUCGGCGUCGAgg-UCGGCGACGc--- -3'
miRNA:   3'- -AGUUGUAGCUauaGGCUGCUGCccua -5'
16285 5' -50.6 NC_004084.1 + 29200 0.66 0.920969
Target:  5'- cUCGGCGUCGAUGUuccagagcgcgUCGACGuuguucGCGGGc- -3'
miRNA:   3'- -AGUUGUAGCUAUA-----------GGCUGC------UGCCCua -5'
16285 5' -50.6 NC_004084.1 + 28273 0.67 0.914672
Target:  5'- gCGGCuUCGAc--UCGugGACGGGAg -3'
miRNA:   3'- aGUUGuAGCUauaGGCugCUGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 2391 0.67 0.914672
Target:  5'- aCGACAgCGA-AUCCGACGACGa--- -3'
miRNA:   3'- aGUUGUaGCUaUAGGCUGCUGCccua -5'
16285 5' -50.6 NC_004084.1 + 21376 0.67 0.908086
Target:  5'- aUCGACAUCGAcgaCCGugaGGCGGcGAUg -3'
miRNA:   3'- -AGUUGUAGCUauaGGCug-CUGCC-CUA- -5'
16285 5' -50.6 NC_004084.1 + 48044 0.67 0.903996
Target:  5'- cUCGACGUCGAacucAUCCGgACGgcgcugcacaccgucGCGGGGc -3'
miRNA:   3'- -AGUUGUAGCUa---UAGGC-UGC---------------UGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 49066 0.67 0.901213
Target:  5'- aUCGugacCGUCGAcGUgCGACGGuCGGGAg -3'
miRNA:   3'- -AGUu---GUAGCUaUAgGCUGCU-GCCCUa -5'
16285 5' -50.6 NC_004084.1 + 32025 0.67 0.894058
Target:  5'- cCGAUAUCGAUgccgucgcGUCUGACcaGACGGcGAUg -3'
miRNA:   3'- aGUUGUAGCUA--------UAGGCUG--CUGCC-CUA- -5'
16285 5' -50.6 NC_004084.1 + 21334 0.67 0.894058
Target:  5'- cUCGAgGUCGGUA-CUGACGAgGaGGAc -3'
miRNA:   3'- -AGUUgUAGCUAUaGGCUGCUgC-CCUa -5'
16285 5' -50.6 NC_004084.1 + 44216 0.67 0.886624
Target:  5'- cUCGACGagCgGAUggCCGACGGCuGGGAg -3'
miRNA:   3'- -AGUUGUa-G-CUAuaGGCUGCUG-CCCUa -5'
16285 5' -50.6 NC_004084.1 + 36446 0.67 0.886624
Target:  5'- aCGACAUCcugGGUAUCCGcguCGucCGGGAg -3'
miRNA:   3'- aGUUGUAG---CUAUAGGCu--GCu-GCCCUa -5'
16285 5' -50.6 NC_004084.1 + 30245 0.68 0.878918
Target:  5'- gCGACGUCGAacaggCCGAgGACGGa-- -3'
miRNA:   3'- aGUUGUAGCUaua--GGCUgCUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 36163 0.68 0.878918
Target:  5'- aUCGACGUCGAcGUCCGGguugaguaacuCGGCGaGAUg -3'
miRNA:   3'- -AGUUGUAGCUaUAGGCU-----------GCUGCcCUA- -5'
16285 5' -50.6 NC_004084.1 + 16937 0.68 0.870944
Target:  5'- uUCGGCAUCGGcgggcGUCgCGACGuCGGGu- -3'
miRNA:   3'- -AGUUGUAGCUa----UAG-GCUGCuGCCCua -5'
16285 5' -50.6 NC_004084.1 + 2314 0.68 0.862709
Target:  5'- aCGACGUCGAcgaggaCGAUGACGaGGAg -3'
miRNA:   3'- aGUUGUAGCUauag--GCUGCUGC-CCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.