miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16285 5' -50.6 NC_004084.1 + 40152 0.69 0.817921
Target:  5'- cUCAACGUCGAccgGUUCGAagaCGucauCGGGAUg -3'
miRNA:   3'- -AGUUGUAGCUa--UAGGCU---GCu---GCCCUA- -5'
16285 5' -50.6 NC_004084.1 + 3830 0.69 0.836523
Target:  5'- gUCuuCGUCGAcg-CCGACGACGGc-- -3'
miRNA:   3'- -AGuuGUAGCUauaGGCUGCUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 30413 0.68 0.854222
Target:  5'- cCGACGUCGAcGggCGGCGACGGa-- -3'
miRNA:   3'- aGUUGUAGCUaUagGCUGCUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 45629 0.68 0.854222
Target:  5'- aCAACcuGUCGGUcgUCGACGGCGucucGGAUg -3'
miRNA:   3'- aGUUG--UAGCUAuaGGCUGCUGC----CCUA- -5'
16285 5' -50.6 NC_004084.1 + 4196 0.68 0.862709
Target:  5'- cCGACGUCGAgAUCCGACucgagccgcuGACGGu-- -3'
miRNA:   3'- aGUUGUAGCUaUAGGCUG----------CUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 2314 0.68 0.862709
Target:  5'- aCGACGUCGAcgaggaCGAUGACGaGGAg -3'
miRNA:   3'- aGUUGUAGCUauag--GCUGCUGC-CCUa -5'
16285 5' -50.6 NC_004084.1 + 26260 0.73 0.579957
Target:  5'- cUCGGCGUUGAUcaucGUCuCGuGCGACGGGAc -3'
miRNA:   3'- -AGUUGUAGCUA----UAG-GC-UGCUGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 36674 0.72 0.632824
Target:  5'- gCAGCAUCGAUGUCCaggaggacugcgauGACGuCGcGGAUc -3'
miRNA:   3'- aGUUGUAGCUAUAGG--------------CUGCuGC-CCUA- -5'
16285 5' -50.6 NC_004084.1 + 36545 0.72 0.636209
Target:  5'- gCGACAaCGGUAU-CGACGACGGaGAUg -3'
miRNA:   3'- aGUUGUaGCUAUAgGCUGCUGCC-CUA- -5'
16285 5' -50.6 NC_004084.1 + 6709 0.71 0.692348
Target:  5'- gUCAACGccggCGAUGUCCGucCGguACGGGAa -3'
miRNA:   3'- -AGUUGUa---GCUAUAGGCu-GC--UGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 16937 0.68 0.870944
Target:  5'- uUCGGCAUCGGcgggcGUCgCGACGuCGGGu- -3'
miRNA:   3'- -AGUUGUAGCUa----UAG-GCUGCuGCCCua -5'
16285 5' -50.6 NC_004084.1 + 30245 0.68 0.878918
Target:  5'- gCGACGUCGAacaggCCGAgGACGGa-- -3'
miRNA:   3'- aGUUGUAGCUaua--GGCUgCUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 36163 0.68 0.878918
Target:  5'- aUCGACGUCGAcGUCCGGguugaguaacuCGGCGaGAUg -3'
miRNA:   3'- -AGUUGUAGCUaUAGGCU-----------GCUGCcCUA- -5'
16285 5' -50.6 NC_004084.1 + 32025 0.67 0.894058
Target:  5'- cCGAUAUCGAUgccgucgcGUCUGACcaGACGGcGAUg -3'
miRNA:   3'- aGUUGUAGCUA--------UAGGCUG--CUGCC-CUA- -5'
16285 5' -50.6 NC_004084.1 + 49066 0.67 0.901213
Target:  5'- aUCGugacCGUCGAcGUgCGACGGuCGGGAg -3'
miRNA:   3'- -AGUu---GUAGCUaUAgGCUGCU-GCCCUa -5'
16285 5' -50.6 NC_004084.1 + 40899 0.98 0.020348
Target:  5'- uUCAACAUCGAUAUCCGACG-CGGGAUg -3'
miRNA:   3'- -AGUUGUAGCUAUAGGCUGCuGCCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.