Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16309 | 5' | -58.1 | NC_004084.1 | + | 47122 | 0.66 | 0.538854 |
Target: 5'- uGCAUccggugCGACGCCGAGCgagaGGGGCa---- -3' miRNA: 3'- uUGUA------GCUGCGGCUCG----UCCCGcucaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 49849 | 0.66 | 0.538854 |
Target: 5'- -uCGUCGACGUcgCGAGCGagauccGGCGAGUc -3' miRNA: 3'- uuGUAGCUGCG--GCUCGUc-----CCGCUCAa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 57132 | 0.66 | 0.538854 |
Target: 5'- -uCAUCGAgcgaGCCGGGCAuccccGGGCGAu-- -3' miRNA: 3'- uuGUAGCUg---CGGCUCGU-----CCCGCUcaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 35461 | 0.66 | 0.528254 |
Target: 5'- uGACAUCGAC-CagGAGCAGGuCGAGg- -3' miRNA: 3'- -UUGUAGCUGcGg-CUCGUCCcGCUCaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 7423 | 0.66 | 0.528254 |
Target: 5'- cGACGagggCGAUGCCGA-CGGuGGCGAGa- -3' miRNA: 3'- -UUGUa---GCUGCGGCUcGUC-CCGCUCaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 57000 | 0.66 | 0.517731 |
Target: 5'- gGACggCGACGCCGAGaauGGCGAc-- -3' miRNA: 3'- -UUGuaGCUGCGGCUCgucCCGCUcaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 56605 | 0.66 | 0.507294 |
Target: 5'- cGGCGUCGuCGCCG-GUc-GGCGAGUUc -3' miRNA: 3'- -UUGUAGCuGCGGCuCGucCCGCUCAA- -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 39049 | 0.67 | 0.44675 |
Target: 5'- cAGCAUC-AUGCCGAGUacuacgAGGGCGAu-- -3' miRNA: 3'- -UUGUAGcUGCGGCUCG------UCCCGCUcaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 22179 | 0.67 | 0.44675 |
Target: 5'- gGACGUCGAC-CCG-GUAGG-CGAGUUc -3' miRNA: 3'- -UUGUAGCUGcGGCuCGUCCcGCUCAA- -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 41303 | 0.67 | 0.440916 |
Target: 5'- -uCAUCGACGUccuggagcggaccggCGAGCGcGGGUGAGa- -3' miRNA: 3'- uuGUAGCUGCG---------------GCUCGU-CCCGCUCaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 7949 | 0.68 | 0.427473 |
Target: 5'- cAACAUCGGCgaacgacaccGCCGAccGCAGgacgaGGCGAGUg -3' miRNA: 3'- -UUGUAGCUG----------CGGCU--CGUC-----CCGCUCAa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 48930 | 0.68 | 0.418021 |
Target: 5'- --gGUCGGCGCCGGGCuucagcuccaGGUGAGUc -3' miRNA: 3'- uugUAGCUGCGGCUCGuc--------CCGCUCAa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 10531 | 0.68 | 0.408697 |
Target: 5'- -cCGUCGACguuGCCGAGcCAGcGGaCGAGUa -3' miRNA: 3'- uuGUAGCUG---CGGCUC-GUC-CC-GCUCAa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 47387 | 0.68 | 0.408697 |
Target: 5'- -uCGUCGACGgCGAGCuccAGGGCGcGa- -3' miRNA: 3'- uuGUAGCUGCgGCUCG---UCCCGCuCaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 36165 | 0.68 | 0.399505 |
Target: 5'- cGACGUCGACGuCCGGGUugaguaacucGGCGAGa- -3' miRNA: 3'- -UUGUAGCUGC-GGCUCGuc--------CCGCUCaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 5328 | 0.68 | 0.390445 |
Target: 5'- cGAC-UCGAagaucacguCGCCGAGCGGgcGGCGAGg- -3' miRNA: 3'- -UUGuAGCU---------GCGGCUCGUC--CCGCUCaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 56911 | 0.69 | 0.381521 |
Target: 5'- uGCAUCGGCuUCGAGCucgAGGGCGAcGUc -3' miRNA: 3'- uUGUAGCUGcGGCUCG---UCCCGCU-CAa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 11722 | 0.69 | 0.364085 |
Target: 5'- aGAgAUgGGCGCUGAGCAGuGGCGcGUc -3' miRNA: 3'- -UUgUAgCUGCGGCUCGUC-CCGCuCAa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 7394 | 0.7 | 0.330899 |
Target: 5'- cGCAUCGACgaGCUGAGCAaGGCGAu-- -3' miRNA: 3'- uUGUAGCUG--CGGCUCGUcCCGCUcaa -5' |
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16309 | 5' | -58.1 | NC_004084.1 | + | 39293 | 0.7 | 0.31516 |
Target: 5'- gGAC-UCGAuCGUCGAGCaccgagAGGGCGAGg- -3' miRNA: 3'- -UUGuAGCU-GCGGCUCG------UCCCGCUCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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