Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 20758 | 0.66 | 0.979275 |
|
Target: 5'- uUUGGUaucgugaauAGACCUUAUCAAACAUc---- -3' miRNA: 3'- -AGCCG---------UCUGGAAUAGUUUGUGagauu -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 16241 | 0.67 | 0.966976 |
|
Target: 5'- gUCGGCAGGCCUguUC---UACUCg-- -3' miRNA: 3'- -AGCCGUCUGGAauAGuuuGUGAGauu -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 35696 | 0.68 | 0.940067 |
|
Target: 5'- -gGGCGGACUUcGUCGGGuCGCUCg-- -3' miRNA: 3'- agCCGUCUGGAaUAGUUU-GUGAGauu -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 37599 | 0.69 | 0.927425 |
|
Target: 5'- cUCGGggagcgcucucaAGACCUUAUCAAACACg---- -3' miRNA: 3'- -AGCCg-----------UCUGGAAUAGUUUGUGagauu -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 39851 | 0.69 | 0.922449 |
|
Target: 5'- aUCGGCGG-CCgcggcgccGUCGAGCACgCUGAg -3' miRNA: 3'- -AGCCGUCuGGaa------UAGUUUGUGaGAUU- -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 30343 | 0.71 | 0.84377 |
|
Target: 5'- gUCGGCGagguGGCCgacggcGUCGGAUGCUCUGAa -3' miRNA: 3'- -AGCCGU----CUGGaa----UAGUUUGUGAGAUU- -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 38534 | 0.72 | 0.804717 |
|
Target: 5'- aUCGGCGGACCaa--CGAGUACUCUAc -3' miRNA: 3'- -AGCCGUCUGGaauaGUUUGUGAGAUu -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 33543 | 0.73 | 0.762362 |
|
Target: 5'- cUGGCAuGACCUUAUCAAACG-UUUAGa -3' miRNA: 3'- aGCCGU-CUGGAAUAGUUUGUgAGAUU- -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 4829 | 0.73 | 0.717563 |
|
Target: 5'- aUCGGCGgggagagucauGACCUUAUCAAACAUUa--- -3' miRNA: 3'- -AGCCGU-----------CUGGAAUAGUUUGUGAgauu -5' |
|||||||
| 16315 | 3' | -47.6 | NC_004084.1 | + | 26612 | 1.07 | 0.007278 |
|
Target: 5'- cUCGGCAGACCUUAUCAAACACUCUAAu -3' miRNA: 3'- -AGCCGUCUGGAAUAGUUUGUGAGAUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home