miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16315 5' -47.3 NC_004084.1 + 29370 0.66 0.990557
Target:  5'- cGCCCGGGaucccgcgucccuccUGgaaggUGAUGccgcccucgauGGGCUCCuGCa -3'
miRNA:   3'- -CGGGUCU---------------ACaa---ACUAU-----------UCUGAGGuCG- -5'
16315 5' -47.3 NC_004084.1 + 29480 0.66 0.989988
Target:  5'- cGCUCgaGGGUGcggcggUGGUucuccagcuuGGGGCUCCAGCc -3'
miRNA:   3'- -CGGG--UCUACaa----ACUA----------UUCUGAGGUCG- -5'
16315 5' -47.3 NC_004084.1 + 49764 0.66 0.986726
Target:  5'- cGCCCAGAcccucgGcgAGGACUaCAGCc -3'
miRNA:   3'- -CGGGUCUacaaa-CuaUUCUGAgGUCG- -5'
16315 5' -47.3 NC_004084.1 + 31908 0.67 0.984816
Target:  5'- aCCCucgcGAUGgaUGcgaucUGGGAUUCCAGCu -3'
miRNA:   3'- cGGGu---CUACaaACu----AUUCUGAGGUCG- -5'
16315 5' -47.3 NC_004084.1 + 31790 0.67 0.982704
Target:  5'- gGCCgAGugugcgauuagaGUGUUUGAUAAGGuCUgCCgAGCg -3'
miRNA:   3'- -CGGgUC------------UACAAACUAUUCU-GA-GG-UCG- -5'
16315 5' -47.3 NC_004084.1 + 17855 0.67 0.980377
Target:  5'- gGCCgAGAUGUcgGucgaaucGGACUCUGGUg -3'
miRNA:   3'- -CGGgUCUACAaaCuau----UCUGAGGUCG- -5'
16315 5' -47.3 NC_004084.1 + 4573 0.68 0.971999
Target:  5'- aGUCCGGAUGUUUGc----AUUCCAGg -3'
miRNA:   3'- -CGGGUCUACAAACuauucUGAGGUCg -5'
16315 5' -47.3 NC_004084.1 + 41736 0.7 0.913456
Target:  5'- uCCCGGAUGac-GAUcGGGACgacgCCGGCg -3'
miRNA:   3'- cGGGUCUACaaaCUA-UUCUGa---GGUCG- -5'
16315 5' -47.3 NC_004084.1 + 1291 0.71 0.892016
Target:  5'- uGCCCGgcucgcucGAUGagUGAUAGGAUcUCAGCa -3'
miRNA:   3'- -CGGGU--------CUACaaACUAUUCUGaGGUCG- -5'
16315 5' -47.3 NC_004084.1 + 37645 0.71 0.876245
Target:  5'- gGCCCuuuGAUGUUUGAUAAGG-UCUAu- -3'
miRNA:   3'- -CGGGu--CUACAAACUAUUCUgAGGUcg -5'
16315 5' -47.3 NC_004084.1 + 26649 1.17 0.002338
Target:  5'- gGCCCAGAUGUUUGAUAAGACUCCAGCg -3'
miRNA:   3'- -CGGGUCUACAAACUAUUCUGAGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.