miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 5' -52.9 NC_004084.1 + 5015 0.66 0.888817
Target:  5'- cCGAGAGGgGAUCAaCGGGcugAUCGa- -3'
miRNA:   3'- -GCUCUCUgCUGGUaGCCCua-UAGCgg -5'
16332 5' -52.9 NC_004084.1 + 29063 0.66 0.88141
Target:  5'- -aGGccGCGACCGcccgcUCGGGGgcgucGUCGCCg -3'
miRNA:   3'- gcUCucUGCUGGU-----AGCCCUa----UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 38387 0.66 0.88141
Target:  5'- aCGAGAcGCGAUCGUCGuccucGAg--CGCCg -3'
miRNA:   3'- -GCUCUcUGCUGGUAGCc----CUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 26171 0.66 0.88141
Target:  5'- uCGAcGAGAacguagucccaaCGACCGUCGGc--GUCGUCg -3'
miRNA:   3'- -GCU-CUCU------------GCUGGUAGCCcuaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 35691 0.66 0.88141
Target:  5'- cCGcuGGGCGGacuUCGUCGGGucgcUCGCCg -3'
miRNA:   3'- -GCucUCUGCU---GGUAGCCCuau-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 33006 0.66 0.86584
Target:  5'- uCGGGAuGCGG--AUCGGGGagAUCGCCc -3'
miRNA:   3'- -GCUCUcUGCUggUAGCCCUa-UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 5882 0.66 0.857689
Target:  5'- gGAGcAGACcGCCA-CGGGG-AUCGUCc -3'
miRNA:   3'- gCUC-UCUGcUGGUaGCCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 26756 0.66 0.857689
Target:  5'- ----cGACGGCCAUCGaGAgGUCGCg -3'
miRNA:   3'- gcucuCUGCUGGUAGCcCUaUAGCGg -5'
16332 5' -52.9 NC_004084.1 + 50790 0.66 0.857689
Target:  5'- cCGAcGAGACGaACC--CGGGA-AUCGUCc -3'
miRNA:   3'- -GCU-CUCUGC-UGGuaGCCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 9553 0.67 0.849305
Target:  5'- uGGGAGuACGGCUA-CGaGGAgguaccggaGUCGCCg -3'
miRNA:   3'- gCUCUC-UGCUGGUaGC-CCUa--------UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 29388 0.67 0.840694
Target:  5'- aCGAGcaacggucGGGCGGCCAcuccUGGGGcGUCGCg -3'
miRNA:   3'- -GCUC--------UCUGCUGGUa---GCCCUaUAGCGg -5'
16332 5' -52.9 NC_004084.1 + 33219 0.67 0.840694
Target:  5'- -cAGAGGCGGCCGagCGGGccGUCcCCu -3'
miRNA:   3'- gcUCUCUGCUGGUa-GCCCuaUAGcGG- -5'
16332 5' -52.9 NC_004084.1 + 4960 0.67 0.840694
Target:  5'- cCGGGAGACGAcgacCCA-CGaGGAgAUCGgCg -3'
miRNA:   3'- -GCUCUCUGCU----GGUaGC-CCUaUAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 44220 0.67 0.840694
Target:  5'- aCGAGcGGAUGGCCGacggcUGGGAgcUCGUCu -3'
miRNA:   3'- -GCUC-UCUGCUGGUa----GCCCUauAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 27932 0.67 0.840694
Target:  5'- uGAGaAGACGACUAcUCGGGuaacugGUCGg- -3'
miRNA:   3'- gCUC-UCUGCUGGU-AGCCCua----UAGCgg -5'
16332 5' -52.9 NC_004084.1 + 41890 0.67 0.831866
Target:  5'- gCGAGGagguccacGACGACCG-CGGcGcgcgAUCGCCu -3'
miRNA:   3'- -GCUCU--------CUGCUGGUaGCC-Cua--UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 47504 0.67 0.831866
Target:  5'- gCGaAGAcGACGAacuccCCgAUCGGGAguacccgacgAUCGCCa -3'
miRNA:   3'- -GC-UCU-CUGCU-----GG-UAGCCCUa---------UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 34607 0.67 0.826469
Target:  5'- -uGGAGACGcucaccgcguccauuGCCGUCuGGGA-GUCGCUc -3'
miRNA:   3'- gcUCUCUGC---------------UGGUAG-CCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 867 0.67 0.82283
Target:  5'- aGAGucagucgucGACGucGCCGUCGGaaucGGUAUCGCUg -3'
miRNA:   3'- gCUCu--------CUGC--UGGUAGCC----CUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 22336 0.67 0.813594
Target:  5'- gGAGAcGGCGACCucGUCGcGGuccUCGUCg -3'
miRNA:   3'- gCUCU-CUGCUGG--UAGC-CCuauAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.