miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 5' -55.1 NC_004084.1 + 10415 1.07 0.001618
Target:  5'- cGUCGACCAUCUCGCAGUCGACGUCCUc -3'
miRNA:   3'- -CAGCUGGUAGAGCGUCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 37059 0.81 0.109695
Target:  5'- uGUCGAUguUCUCGguGUCGAgGUCCUc -3'
miRNA:   3'- -CAGCUGguAGAGCguCAGCUgCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 957 0.8 0.126088
Target:  5'- gGUCGcggGCCAUCUCGCGGUCGGUGUCgCUg -3'
miRNA:   3'- -CAGC---UGGUAGAGCGUCAGCUGCAG-GA- -5'
16346 5' -55.1 NC_004084.1 + 14204 0.8 0.126088
Target:  5'- cGUCGGCCAUC-CGCucGUCGAgGUCCUc -3'
miRNA:   3'- -CAGCUGGUAGaGCGu-CAGCUgCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 37550 0.76 0.234096
Target:  5'- cUCGAuuCCAUCgccggCGCGGUCGACGUgCCa -3'
miRNA:   3'- cAGCU--GGUAGa----GCGUCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 5488 0.75 0.259411
Target:  5'- -aCGGCCAgaUCgUCGCAGUCGACGagucguUCCUa -3'
miRNA:   3'- caGCUGGU--AG-AGCGUCAGCUGC------AGGA- -5'
16346 5' -55.1 NC_004084.1 + 12759 0.74 0.309018
Target:  5'- -cCGACCGUCUCGUcguuGUCGGCaUCCg -3'
miRNA:   3'- caGCUGGUAGAGCGu---CAGCUGcAGGa -5'
16346 5' -55.1 NC_004084.1 + 10242 0.74 0.309018
Target:  5'- gGUCG-CCuggugagUCGCGGUCGGCGUCCg -3'
miRNA:   3'- -CAGCuGGuag----AGCGUCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 15669 0.74 0.32446
Target:  5'- -cCGACCAUCUC-CGGgcCGAUGUCCUu -3'
miRNA:   3'- caGCUGGUAGAGcGUCa-GCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 21383 0.73 0.340469
Target:  5'- cGUCGguGCCAgCUCGggcaugaucCGGUCGACGUCCa -3'
miRNA:   3'- -CAGC--UGGUaGAGC---------GUCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 51226 0.71 0.438356
Target:  5'- cGUgGugCGUCgaGCAGcUCGACGUCCg -3'
miRNA:   3'- -CAgCugGUAGagCGUC-AGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 16393 0.71 0.44803
Target:  5'- uGUCGACCGcCUCGCucgCGACGgCCa -3'
miRNA:   3'- -CAGCUGGUaGAGCGucaGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 16629 0.71 0.467726
Target:  5'- gGUCGAUCGUgacgccCUCGUcGUCGACGUCg- -3'
miRNA:   3'- -CAGCUGGUA------GAGCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 27791 0.7 0.487859
Target:  5'- cGUCGucGCgAaCUCGUAGUCGGCGUCg- -3'
miRNA:   3'- -CAGC--UGgUaGAGCGUCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 6250 0.7 0.498078
Target:  5'- aUCGAgcgguUCGUCgaCGUGGUCGGCGUCCa -3'
miRNA:   3'- cAGCU-----GGUAGa-GCGUCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 30593 0.7 0.508391
Target:  5'- -gUGACC-UCgcggacgcCGCGGUCGAUGUCCa -3'
miRNA:   3'- caGCUGGuAGa-------GCGUCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 52930 0.7 0.518793
Target:  5'- cGUCGACUgcgacgAUCUgGCcGUCGGCGUCg- -3'
miRNA:   3'- -CAGCUGG------UAGAgCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 882 0.7 0.529278
Target:  5'- cGUCG-CCGUCggaaucgguaUCGCuGUCGGCGUCg- -3'
miRNA:   3'- -CAGCuGGUAG----------AGCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 10989 0.69 0.56117
Target:  5'- aUCgGAUCGUCUUGUcGcCGACGUCCUu -3'
miRNA:   3'- cAG-CUGGUAGAGCGuCaGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 26265 0.69 0.590307
Target:  5'- cGUUGAUCAUCgUcucgugcgacgggaCGCAGUCGACcUCCUg -3'
miRNA:   3'- -CAGCUGGUAG-A--------------GCGUCAGCUGcAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.