miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16396 3' -53 NC_004084.1 + 51453 0.66 0.842648
Target:  5'- gGCGAGGGCcgCGG-CG-GCUGuACGgGCg -3'
miRNA:   3'- -CGCUCCUGa-GCUaGCuCGAC-UGCaUG- -5'
16396 3' -53 NC_004084.1 + 8233 0.68 0.766429
Target:  5'- uGCaGAGGGCgacgucgagaCGAUCGAcgccGCUGACG-ACa -3'
miRNA:   3'- -CG-CUCCUGa---------GCUAGCU----CGACUGCaUG- -5'
16396 3' -53 NC_004084.1 + 3062 0.67 0.796359
Target:  5'- uCGAGGaACUCG-UCGAcgggccGCUcgucGACGUGCg -3'
miRNA:   3'- cGCUCC-UGAGCuAGCU------CGA----CUGCAUG- -5'
16396 3' -53 NC_004084.1 + 52699 0.67 0.806005
Target:  5'- uCGAGGAcCUCGGccCGAGC-GACGUc- -3'
miRNA:   3'- cGCUCCU-GAGCUa-GCUCGaCUGCAug -5'
16396 3' -53 NC_004084.1 + 44282 0.67 0.824735
Target:  5'- gGCGAGGugUCGGUaugaaCGAcGCUGAg--ACg -3'
miRNA:   3'- -CGCUCCugAGCUA-----GCU-CGACUgcaUG- -5'
16396 3' -53 NC_004084.1 + 5626 0.67 0.824735
Target:  5'- cCGAGGACgaaaUUGAagcacUCGAgGCUGGCGaGCg -3'
miRNA:   3'- cGCUCCUG----AGCU-----AGCU-CGACUGCaUG- -5'
16396 3' -53 NC_004084.1 + 9112 0.66 0.833798
Target:  5'- aGCGAgcaggucaaGGACUCGAUCG-GCguccgucgGGCGg-- -3'
miRNA:   3'- -CGCU---------CCUGAGCUAGCuCGa-------CUGCaug -5'
16396 3' -53 NC_004084.1 + 39466 0.66 0.833798
Target:  5'- cGCGAGcGC-CGAUCGAGgaGGCcaACa -3'
miRNA:   3'- -CGCUCcUGaGCUAGCUCgaCUGcaUG- -5'
16396 3' -53 NC_004084.1 + 39285 0.66 0.840016
Target:  5'- cGCGucgcGGACUCGAUCGucgagcaccgagagGGCgagGAC-UACg -3'
miRNA:   3'- -CGCu---CCUGAGCUAGC--------------UCGa--CUGcAUG- -5'
16396 3' -53 NC_004084.1 + 42175 0.68 0.756159
Target:  5'- aCGAGG---CGAUgGAGgaGACGUACg -3'
miRNA:   3'- cGCUCCugaGCUAgCUCgaCUGCAUG- -5'
16396 3' -53 NC_004084.1 + 23477 0.68 0.756159
Target:  5'- cGCGAuGGACUCGAUC-AGCgaguCGUccACa -3'
miRNA:   3'- -CGCU-CCUGAGCUAGcUCGacu-GCA--UG- -5'
16396 3' -53 NC_004084.1 + 27462 0.69 0.724629
Target:  5'- aGCGGGaGACggUCGGcguccUCGAGCUcGACGUcgACg -3'
miRNA:   3'- -CGCUC-CUG--AGCU-----AGCUCGA-CUGCA--UG- -5'
16396 3' -53 NC_004084.1 + 53935 0.71 0.592071
Target:  5'- aCGAGGGC-CGGaaggagcUCGcgaAGCUGAUGUACg -3'
miRNA:   3'- cGCUCCUGaGCU-------AGC---UCGACUGCAUG- -5'
16396 3' -53 NC_004084.1 + 9235 0.71 0.604174
Target:  5'- aGCGAGGAgaagUUCaaGAgCGAGCUggaGACGUACa -3'
miRNA:   3'- -CGCUCCU----GAG--CUaGCUCGA---CUGCAUG- -5'
16396 3' -53 NC_004084.1 + 2005 0.7 0.615203
Target:  5'- uCGAGGACgCGAUCGAGUUcGACu--- -3'
miRNA:   3'- cGCUCCUGaGCUAGCUCGA-CUGcaug -5'
16396 3' -53 NC_004084.1 + 17350 0.7 0.670375
Target:  5'- gGCGAGGGCUCGAgUGAGgaGAa---- -3'
miRNA:   3'- -CGCUCCUGAGCUaGCUCgaCUgcaug -5'
16396 3' -53 NC_004084.1 + 4455 0.7 0.670375
Target:  5'- cGCGcccgacuGGACgaUCGAguUCGAGCUGGCGa-- -3'
miRNA:   3'- -CGCu------CCUG--AGCU--AGCUCGACUGCaug -5'
16396 3' -53 NC_004084.1 + 10898 0.69 0.692263
Target:  5'- -aGAGGAC-CGAuUCGAGgaGGCGcUGCc -3'
miRNA:   3'- cgCUCCUGaGCU-AGCUCgaCUGC-AUG- -5'
16396 3' -53 NC_004084.1 + 47017 0.69 0.692263
Target:  5'- uCGAGGACgucgCGAUCGA--UGACGaUGCc -3'
miRNA:   3'- cGCUCCUGa---GCUAGCUcgACUGC-AUG- -5'
16396 3' -53 NC_004084.1 + 44208 0.69 0.713918
Target:  5'- uUGAGGAcCUCGA-CGAGCgGAUGgccgACg -3'
miRNA:   3'- cGCUCCU-GAGCUaGCUCGaCUGCa---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.