miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16396 3' -53 NC_004084.1 + 31201 0.68 0.77656
Target:  5'- aGCGcGcGGCUCGA-CGAGCUGAUa--- -3'
miRNA:   3'- -CGCuC-CUGAGCUaGCUCGACUGcaug -5'
16396 3' -53 NC_004084.1 + 8233 0.68 0.766429
Target:  5'- uGCaGAGGGCgacgucgagaCGAUCGAcgccGCUGACG-ACa -3'
miRNA:   3'- -CG-CUCCUGa---------GCUAGCU----CGACUGCaUG- -5'
16396 3' -53 NC_004084.1 + 30104 0.68 0.766429
Target:  5'- cGCGAGacCUCGAUCG-GC--GCGUACa -3'
miRNA:   3'- -CGCUCcuGAGCUAGCuCGacUGCAUG- -5'
16396 3' -53 NC_004084.1 + 23477 0.68 0.756159
Target:  5'- cGCGAuGGACUCGAUC-AGCgaguCGUccACa -3'
miRNA:   3'- -CGCU-CCUGAGCUAGcUCGacu-GCA--UG- -5'
16396 3' -53 NC_004084.1 + 42175 0.68 0.756159
Target:  5'- aCGAGG---CGAUgGAGgaGACGUACg -3'
miRNA:   3'- cGCUCCugaGCUAgCUCgaCUGCAUG- -5'
16396 3' -53 NC_004084.1 + 43053 0.68 0.745761
Target:  5'- uCGAGGcGCUCGAUCGcGUUGuucacCGUAUa -3'
miRNA:   3'- cGCUCC-UGAGCUAGCuCGACu----GCAUG- -5'
16396 3' -53 NC_004084.1 + 27462 0.69 0.724629
Target:  5'- aGCGGGaGACggUCGGcguccUCGAGCUcGACGUcgACg -3'
miRNA:   3'- -CGCUC-CUG--AGCU-----AGCUCGA-CUGCA--UG- -5'
16396 3' -53 NC_004084.1 + 57900 0.69 0.724629
Target:  5'- gGUGAGGACgcccucgagUUGAUCGuugaAGCUGGCGa-- -3'
miRNA:   3'- -CGCUCCUG---------AGCUAGC----UCGACUGCaug -5'
16396 3' -53 NC_004084.1 + 44208 0.69 0.713918
Target:  5'- uUGAGGAcCUCGA-CGAGCgGAUGgccgACg -3'
miRNA:   3'- cGCUCCU-GAGCUaGCUCGaCUGCa---UG- -5'
16396 3' -53 NC_004084.1 + 10898 0.69 0.692263
Target:  5'- -aGAGGAC-CGAuUCGAGgaGGCGcUGCc -3'
miRNA:   3'- cgCUCCUGaGCU-AGCUCgaCUGC-AUG- -5'
16396 3' -53 NC_004084.1 + 47017 0.69 0.692263
Target:  5'- uCGAGGACgucgCGAUCGA--UGACGaUGCc -3'
miRNA:   3'- cGCUCCUGa---GCUAGCUcgACUGC-AUG- -5'
16396 3' -53 NC_004084.1 + 17350 0.7 0.670375
Target:  5'- gGCGAGGGCUCGAgUGAGgaGAa---- -3'
miRNA:   3'- -CGCUCCUGAGCUaGCUCgaCUgcaug -5'
16396 3' -53 NC_004084.1 + 4455 0.7 0.670375
Target:  5'- cGCGcccgacuGGACgaUCGAguUCGAGCUGGCGa-- -3'
miRNA:   3'- -CGCu------CCUG--AGCU--AGCUCGACUGCaug -5'
16396 3' -53 NC_004084.1 + 2005 0.7 0.615203
Target:  5'- uCGAGGACgCGAUCGAGUUcGACu--- -3'
miRNA:   3'- cGCUCCUGaGCUAGCUCGA-CUGcaug -5'
16396 3' -53 NC_004084.1 + 9235 0.71 0.604174
Target:  5'- aGCGAGGAgaagUUCaaGAgCGAGCUggaGACGUACa -3'
miRNA:   3'- -CGCUCCU----GAG--CUaGCUCGA---CUGCAUG- -5'
16396 3' -53 NC_004084.1 + 13083 0.71 0.604174
Target:  5'- uCGAGGuCgUCGAUCGAGCcgGAUGUcgguGCg -3'
miRNA:   3'- cGCUCCuG-AGCUAGCUCGa-CUGCA----UG- -5'
16396 3' -53 NC_004084.1 + 53935 0.71 0.592071
Target:  5'- aCGAGGGC-CGGaaggagcUCGcgaAGCUGAUGUACg -3'
miRNA:   3'- cGCUCCUGaGCU-------AGC---UCGACUGCAUG- -5'
16396 3' -53 NC_004084.1 + 17280 0.73 0.486251
Target:  5'- aGCGucGACUCGA--GGGCUGACG-ACa -3'
miRNA:   3'- -CGCucCUGAGCUagCUCGACUGCaUG- -5'
16396 3' -53 NC_004084.1 + 32468 0.73 0.455905
Target:  5'- aCGcGGACUCGAUCGAGCgGAgcUGCu -3'
miRNA:   3'- cGCuCCUGAGCUAGCUCGaCUgcAUG- -5'
16396 3' -53 NC_004084.1 + 11945 1.12 0.001288
Target:  5'- aGCGAGGACUCGAUCGAGCUGACGUACu -3'
miRNA:   3'- -CGCUCCUGAGCUAGCUCGACUGCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.