miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 54209 0.65 0.945799
Target:  5'- --cCGACCGUCagcggcucgagucgGAUcUCGACGUCggaGCGa -3'
miRNA:   3'- ucuGCUGGCAG--------------CUAuAGCUGCAG---UGC- -5'
16407 5' -51.4 NC_004084.1 + 30217 0.66 0.942417
Target:  5'- gAGACcauGACCGgaggCGAUGUccgcggCGACGUCGa- -3'
miRNA:   3'- -UCUG---CUGGCa---GCUAUA------GCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 32007 0.66 0.942417
Target:  5'- uGGAgGGCucgaauuaCGcCGAUAUCGAugcCGUCGCGu -3'
miRNA:   3'- -UCUgCUG--------GCaGCUAUAGCU---GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 43394 0.66 0.942417
Target:  5'- gAGugG-CCGUCGAcgcUCGACGagcCGCa -3'
miRNA:   3'- -UCugCuGGCAGCUau-AGCUGCa--GUGc -5'
16407 5' -51.4 NC_004084.1 + 45669 0.66 0.942417
Target:  5'- cGACGAgaCgGUCGGcGUCGACGagaucgugCGCGg -3'
miRNA:   3'- uCUGCU--GgCAGCUaUAGCUGCa-------GUGC- -5'
16407 5' -51.4 NC_004084.1 + 39059 0.66 0.942417
Target:  5'- gGGACG-UUGUCGAUcagcagGUCGcUGUCGCGc -3'
miRNA:   3'- -UCUGCuGGCAGCUA------UAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 11065 0.66 0.938901
Target:  5'- gGGGCGGCCGccgacgaacaugugcUUGAgGUCGGCGacgagaucgccguUCGCGg -3'
miRNA:   3'- -UCUGCUGGC---------------AGCUaUAGCUGC-------------AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 1970 0.66 0.937353
Target:  5'- gAGAgCGcGCCGUCGAgAUCGuCGUUccgACGg -3'
miRNA:   3'- -UCU-GC-UGGCAGCUaUAGCuGCAG---UGC- -5'
16407 5' -51.4 NC_004084.1 + 11007 0.66 0.937353
Target:  5'- cGACGuCCuUCGGcuUCGuCGUCGCGc -3'
miRNA:   3'- uCUGCuGGcAGCUauAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 27568 0.66 0.936307
Target:  5'- uGACGAgCGggcCGcccaccucuuUCGACGUCGCGa -3'
miRNA:   3'- uCUGCUgGCa--GCuau-------AGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 4968 0.66 0.932014
Target:  5'- cGACGACCcaCGAggagAUCGGCGggaccCACu -3'
miRNA:   3'- uCUGCUGGcaGCUa---UAGCUGCa----GUGc -5'
16407 5' -51.4 NC_004084.1 + 51410 0.66 0.932014
Target:  5'- cGACG-CCGUCGAggccuUCGAgGgcgaCACGc -3'
miRNA:   3'- uCUGCuGGCAGCUau---AGCUgCa---GUGC- -5'
16407 5' -51.4 NC_004084.1 + 7803 0.66 0.932014
Target:  5'- --cUGACCGUCGAcgaccUCGACG-CugGa -3'
miRNA:   3'- ucuGCUGGCAGCUau---AGCUGCaGugC- -5'
16407 5' -51.4 NC_004084.1 + 47742 0.66 0.928677
Target:  5'- cGAUGACCGccauccgguuggcgCGAUccaucAUCGACGcCGCGu -3'
miRNA:   3'- uCUGCUGGCa-------------GCUA-----UAGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 18425 0.66 0.926397
Target:  5'- uGGACGGgC-UCGAUcUCGAuauaucCGUCACGa -3'
miRNA:   3'- -UCUGCUgGcAGCUAuAGCU------GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 53595 0.66 0.92582
Target:  5'- cGACGAUCGgcgagcuUUGAUcUCGACGUUgACGa -3'
miRNA:   3'- uCUGCUGGC-------AGCUAuAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 57125 0.66 0.920502
Target:  5'- aGGACGuCC-UCGGUGUCGcCGUCu-- -3'
miRNA:   3'- -UCUGCuGGcAGCUAUAGCuGCAGugc -5'
16407 5' -51.4 NC_004084.1 + 48030 0.66 0.920502
Target:  5'- uGGACGA-CGaCGAgcUCGACGUCGa- -3'
miRNA:   3'- -UCUGCUgGCaGCUauAGCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 20059 0.67 0.914331
Target:  5'- cGAUG-CUGUCGAUAcCGACGaCGCc -3'
miRNA:   3'- uCUGCuGGCAGCUAUaGCUGCaGUGc -5'
16407 5' -51.4 NC_004084.1 + 23362 0.67 0.907884
Target:  5'- uGGCGACCGccugcCGGUAUCaGGCGaUCAuCGa -3'
miRNA:   3'- uCUGCUGGCa----GCUAUAG-CUGC-AGU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.