Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16439 | 5' | -39.5 | NC_004084.1 | + | 33587 | 0.67 | 1 |
|
Target: 5'- ------cUGUUUGAUAAGGUCg---- -3' miRNA: 3'- ggaaacuACAAACUAUUCCAGauaag -5' |
|||||||
| 16439 | 5' | -39.5 | NC_004084.1 | + | 4874 | 0.71 | 0.999891 |
|
Target: 5'- aCCgggUUaGAUGUUUGAUAAGGUg----- -3' miRNA: 3'- -GGa--AA-CUACAAACUAUUCCAgauaag -5' |
|||||||
| 16439 | 5' | -39.5 | NC_004084.1 | + | 20807 | 0.72 | 0.999802 |
|
Target: 5'- ---gUGcGUGUUUGAUAAGGUCUu--- -3' miRNA: 3'- ggaaAC-UACAAACUAUUCCAGAuaag -5' |
|||||||
| 16439 | 5' | -39.5 | NC_004084.1 | + | 53574 | 0.73 | 0.998823 |
|
Target: 5'- cCCUcuaAUGUUUGAUAAGGUCa---- -3' miRNA: 3'- -GGAaacUACAAACUAUUCCAGauaag -5' |
|||||||
| 16439 | 5' | -39.5 | NC_004084.1 | + | 31808 | 0.74 | 0.997256 |
|
Target: 5'- -----aGUGUUUGAUAAGGUCUGc-- -3' miRNA: 3'- ggaaacUACAAACUAUUCCAGAUaag -5' |
|||||||
| 16439 | 5' | -39.5 | NC_004084.1 | + | 37647 | 1.17 | 0.020222 |
|
Target: 5'- cCCUUUGAUGUUUGAUAAGGUCUAUUCa -3' miRNA: 3'- -GGAAACUACAAACUAUUCCAGAUAAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home