miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16459 5' -54.7 NC_004084.1 + 28355 0.66 0.745879
Target:  5'- cGGcag-CCUCGACGGcuggcacaacGACGCGAGCGg -3'
miRNA:   3'- uCCucaaGGGGUUGCU----------CUGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 28874 0.74 0.339099
Target:  5'- uGGGcGUUCCgCAGCGAGAucucgcCGCGGGUGg -3'
miRNA:   3'- -UCCuCAAGGgGUUGCUCU------GCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 30463 0.73 0.381806
Target:  5'- gGGGAcGUUCCUCuACGAGGCGCu-GCc -3'
miRNA:   3'- -UCCU-CAAGGGGuUGCUCUGCGuuCGc -5'
16459 5' -54.7 NC_004084.1 + 41315 0.67 0.714178
Target:  5'- uGGAGcggaCCGGCGAG-CGCGGGUGa -3'
miRNA:   3'- uCCUCaaggGGUUGCUCuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 41458 0.68 0.626893
Target:  5'- gAGGucuugcAGUggCCCGGCGAG-UGCGGGCGa -3'
miRNA:   3'- -UCC------UCAagGGGUUGCUCuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 43015 1.1 0.001077
Target:  5'- gAGGAGUUCCCCAACGAGACGCAAGCGg -3'
miRNA:   3'- -UCCUCAAGGGGUUGCUCUGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 43747 0.66 0.766457
Target:  5'- -cGAGga-CCCGGcCGGGACGCucGCGg -3'
miRNA:   3'- ucCUCaagGGGUU-GCUCUGCGuuCGC- -5'
16459 5' -54.7 NC_004084.1 + 48759 0.69 0.581935
Target:  5'- uAGGAGaucgagUCCCCcaugaucgugucgGACGAGAUGCccucGGCGu -3'
miRNA:   3'- -UCCUCa-----AGGGG-------------UUGCUCUGCGu---UCGC- -5'
16459 5' -54.7 NC_004084.1 + 51629 0.68 0.615896
Target:  5'- cGGGAGcugaUCCCCGACGucuucGGCGUuccgcaggAGGCGa -3'
miRNA:   3'- -UCCUCa---AGGGGUUGCu----CUGCG--------UUCGC- -5'
16459 5' -54.7 NC_004084.1 + 51677 0.77 0.198286
Target:  5'- gAGGAGUUCCCCuACGGGACGUc---- -3'
miRNA:   3'- -UCCUCAAGGGGuUGCUCUGCGuucgc -5'
16459 5' -54.7 NC_004084.1 + 54750 0.67 0.69262
Target:  5'- gAGGAGUUCCUCGACGccaAGcccaaccccCGCcAGCGc -3'
miRNA:   3'- -UCCUCAAGGGGUUGC---UCu--------GCGuUCGC- -5'
16459 5' -54.7 NC_004084.1 + 56306 0.69 0.583026
Target:  5'- gAGGAugcGUccgUUCUCGACGAGGauuCGCAGGCGa -3'
miRNA:   3'- -UCCU---CA---AGGGGUUGCUCU---GCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 57305 0.68 0.637895
Target:  5'- cAGGAccUCCUCGACGAggggGACGCcuacaAAGCGg -3'
miRNA:   3'- -UCCUcaAGGGGUUGCU----CUGCG-----UUCGC- -5'
16459 5' -54.7 NC_004084.1 + 57787 0.7 0.49772
Target:  5'- gAGGAGcUCCaCGACGAGAuCGCcAGCu -3'
miRNA:   3'- -UCCUCaAGGgGUUGCUCU-GCGuUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.