Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16468 | 3' | -50.4 | NC_004084.1 | + | 7278 | 0.66 | 0.958347 |
Target: 5'- gCCUCCUCGUUCGG-GAUCGc------ -3' miRNA: 3'- -GGAGGGGCAGGUCuCUAGUuuaagcu -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 51075 | 0.66 | 0.954178 |
Target: 5'- gCCUCCUgGgacgaCCGGGcGAUCGAAguccUCGAg -3' miRNA: 3'- -GGAGGGgCa----GGUCU-CUAGUUUa---AGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 9389 | 0.66 | 0.954178 |
Target: 5'- cCCgUCCCGUCCAGGacgucgugucGGUCAcgaUCGAc -3' miRNA: 3'- -GGaGGGGCAGGUCU----------CUAGUuuaAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 10370 | 0.66 | 0.949735 |
Target: 5'- --gCgCCGUCCGGAuGAguUCGAcgUCGAg -3' miRNA: 3'- ggaGgGGCAGGUCU-CU--AGUUuaAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 55951 | 0.66 | 0.949735 |
Target: 5'- uCCUCCUCGcgaUCCAGcguggcucGGAUCucg-UCGAc -3' miRNA: 3'- -GGAGGGGC---AGGUC--------UCUAGuuuaAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 18210 | 0.66 | 0.945015 |
Target: 5'- gUCUCCUCGUCCAgcucGAGGUgaaCGAggUCGc -3' miRNA: 3'- -GGAGGGGCAGGU----CUCUA---GUUuaAGCu -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 12428 | 0.67 | 0.934728 |
Target: 5'- uUCUCgCCGUCCAu-GAUCGcg-UCGAc -3' miRNA: 3'- -GGAGgGGCAGGUcuCUAGUuuaAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 57980 | 0.67 | 0.923298 |
Target: 5'- uCCUCCgCCGUCUcGAGGUCGccguaGAc -3' miRNA: 3'- -GGAGG-GGCAGGuCUCUAGUuuaagCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 39865 | 0.67 | 0.923298 |
Target: 5'- aUCUCCCCGUCgGcccaccCGAGUUCGAu -3' miRNA: 3'- -GGAGGGGCAGgUcucua-GUUUAAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 52213 | 0.67 | 0.910722 |
Target: 5'- --aCCUCGUCgGGcAGAUCAucgauuGAUUCGAa -3' miRNA: 3'- ggaGGGGCAGgUC-UCUAGU------UUAAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 30907 | 0.68 | 0.889741 |
Target: 5'- aUCUCCCCGga-GGAGGUCc---UCGAg -3' miRNA: 3'- -GGAGGGGCaggUCUCUAGuuuaAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 47442 | 0.71 | 0.762875 |
Target: 5'- aUCUCCuCCaGUCCAGAaggGAUCGAggUCGu -3' miRNA: 3'- -GGAGG-GG-CAGGUCU---CUAGUUuaAGCu -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 7469 | 0.71 | 0.741814 |
Target: 5'- uCgUCCUCGUCgaggaGGAGAUCAGGgucgUCGAc -3' miRNA: 3'- -GgAGGGGCAGg----UCUCUAGUUUa---AGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 4448 | 0.72 | 0.720293 |
Target: 5'- gCCUCgacgcgCCCGaCUGGAcGAUCGAGUUCGAg -3' miRNA: 3'- -GGAG------GGGCaGGUCU-CUAGUUUAAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 17511 | 0.72 | 0.676259 |
Target: 5'- gCUCCUCGUCCAGGGccucCAGcgUCGc -3' miRNA: 3'- gGAGGGGCAGGUCUCua--GUUuaAGCu -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 18520 | 0.73 | 0.631527 |
Target: 5'- gCUCUCCGUCguGGGGUCcuggUCGAu -3' miRNA: 3'- gGAGGGGCAGguCUCUAGuuuaAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 56877 | 0.75 | 0.531823 |
Target: 5'- gUCUCCCCcgguUCCAGGGAUCG---UCGAc -3' miRNA: 3'- -GGAGGGGc---AGGUCUCUAGUuuaAGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 21248 | 0.76 | 0.458344 |
Target: 5'- -aUCCCgGUCUGGAGAUCGGAgaCGAa -3' miRNA: 3'- ggAGGGgCAGGUCUCUAGUUUaaGCU- -5' |
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16468 | 3' | -50.4 | NC_004084.1 | + | 45951 | 1.12 | 0.00254 |
Target: 5'- aCCUCCCCGUCCAGAGAUCAAAUUCGAc -3' miRNA: 3'- -GGAGGGGCAGGUCUCUAGUUUAAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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