miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 5' -55.5 NC_004084.1 + 7245 0.67 0.629465
Target:  5'- -uCCUCGAcuggguccaggACgagAGCGACACCGAcaCCGa -3'
miRNA:   3'- uuGGAGCU-----------UGag-UCGCUGUGGCU--GGC- -5'
16502 5' -55.5 NC_004084.1 + 8894 0.67 0.629465
Target:  5'- cACCUCGAucgUCcGUgGAUGCCGACCGg -3'
miRNA:   3'- uUGGAGCUug-AGuCG-CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 37098 0.67 0.629465
Target:  5'- cGACCUCGAGgUCuGCcucgauGACGCCG-CUGg -3'
miRNA:   3'- -UUGGAGCUUgAGuCG------CUGUGGCuGGC- -5'
16502 5' -55.5 NC_004084.1 + 40478 0.67 0.629465
Target:  5'- cGGCCUCGAACgCGaCGAC-CUGAUCGa -3'
miRNA:   3'- -UUGGAGCUUGaGUcGCUGuGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 17885 0.68 0.61852
Target:  5'- uGACCuuUCGAGCUCGucugaaGACGCCGACg- -3'
miRNA:   3'- -UUGG--AGCUUGAGUcg----CUGUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 7449 0.68 0.61852
Target:  5'- aGACCUCGGAgUCcgacGGCGAC-UCGAgCGg -3'
miRNA:   3'- -UUGGAGCUUgAG----UCGCUGuGGCUgGC- -5'
16502 5' -55.5 NC_004084.1 + 12737 0.68 0.607588
Target:  5'- -uCCgcgcaCGAuCUCGuCGACGCCGACCGu -3'
miRNA:   3'- uuGGa----GCUuGAGUcGCUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 40345 0.68 0.596676
Target:  5'- -uCCUCGAAgggCGGC-ACAUCGACCGc -3'
miRNA:   3'- uuGGAGCUUga-GUCGcUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 47158 0.68 0.596676
Target:  5'- uACCUCcuGCUCuacGGCGACugggauGCUGACCGg -3'
miRNA:   3'- uUGGAGcuUGAG---UCGCUG------UGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 56916 0.68 0.579283
Target:  5'- cGGCUUCGAGCUCgagGGCGACGucuaccaggaggucgUCGAUCGc -3'
miRNA:   3'- -UUGGAGCUUGAG---UCGCUGU---------------GGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 3817 0.68 0.574951
Target:  5'- cGACCUCGAuccaguCUUcGuCGACGCCGACg- -3'
miRNA:   3'- -UUGGAGCUu-----GAGuC-GCUGUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 7945 0.68 0.573869
Target:  5'- -cCCUC-AACaUCGGCGAacgacacCGCCGACCGc -3'
miRNA:   3'- uuGGAGcUUG-AGUCGCU-------GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 14091 0.69 0.55341
Target:  5'- aGACgUCGAugUCgucguGGCGGCAguguCCGACCu -3'
miRNA:   3'- -UUGgAGCUugAG-----UCGCUGU----GGCUGGc -5'
16502 5' -55.5 NC_004084.1 + 1797 0.69 0.532117
Target:  5'- gAGCCaCGAuC-CGGCGAacuCGCCGACCGg -3'
miRNA:   3'- -UUGGaGCUuGaGUCGCU---GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 5123 0.69 0.521581
Target:  5'- cGACCgUCGAuacaacCUCGGCGugG-CGACCGa -3'
miRNA:   3'- -UUGG-AGCUu-----GAGUCGCugUgGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 11291 0.7 0.504896
Target:  5'- -cCCUCucGCUCGGCGuCgcaccggaugcagguGCCGACCGg -3'
miRNA:   3'- uuGGAGcuUGAGUCGCuG---------------UGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 45775 0.7 0.50076
Target:  5'- cAACUUCGuACUCuGCGAgugguugACCGACCGa -3'
miRNA:   3'- -UUGGAGCuUGAGuCGCUg------UGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 22294 0.7 0.50076
Target:  5'- cACCUCGcgUUCGGCGAUgacgauacGCCG-CCGg -3'
miRNA:   3'- uUGGAGCuuGAGUCGCUG--------UGGCuGGC- -5'
16502 5' -55.5 NC_004084.1 + 39952 0.7 0.490487
Target:  5'- cACCUCGAACUCgAGCGGguCAUCGcUCGa -3'
miRNA:   3'- uUGGAGCUUGAG-UCGCU--GUGGCuGGC- -5'
16502 5' -55.5 NC_004084.1 + 20659 0.7 0.480314
Target:  5'- uGACCUCGAugaggagugGCUCGGCGAaga-GACCa -3'
miRNA:   3'- -UUGGAGCU---------UGAGUCGCUguggCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.