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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16520 | 3' | -57.1 | NC_004102.1 | + | 1771 | 0.66 | 0.179379 |
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Target: 5'- aAGCGGCCUCgacgaaCGCCCCUacugcUGGcacuacccuccaAGACCu -3' miRNA: 3'- gUCGUUGGAG------GUGGGGA-----ACC------------UCUGGu -5' |
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| 16520 | 3' | -57.1 | NC_004102.1 | + | 3255 | 0.66 | 0.168637 |
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Target: 5'- cCAGUcgUCUUC-UCCCgaaUGGAGACCAa -3' miRNA: 3'- -GUCGuuGGAGGuGGGGa--ACCUCUGGU- -5' |
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| 16520 | 3' | -57.1 | NC_004102.1 | + | 6086 | 0.67 | 0.144266 |
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Target: 5'- cCGGCuaauAGCCUUCGCCUCccgGGGGaACCAu -3' miRNA: 3'- -GUCG----UUGGAGGUGGGGaa-CCUC-UGGU- -5' |
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| 16520 | 3' | -57.1 | NC_004102.1 | + | 8624 | 0.69 | 0.098387 |
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Target: 5'- cCAGguA-CUCCGCCCCccccGGGGACCc -3' miRNA: 3'- -GUCguUgGAGGUGGGGaa--CCUCUGGu -5' |
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| 16520 | 3' | -57.1 | NC_004102.1 | + | 106 | 0.75 | 0.033136 |
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Target: 5'- -uGCAGCCUCCAggacccCCCCUcccgGGAGAgCCAu -3' miRNA: 3'- guCGUUGGAGGU------GGGGAa---CCUCU-GGU- -5' |
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| 16520 | 3' | -57.1 | NC_004102.1 | + | 3426 | 1.08 | 5.2e-05 |
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Target: 5'- cCAGCAACCUCCACCCCUUGGAGACCAu -3' miRNA: 3'- -GUCGUUGGAGGUGGGGAACCUCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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