Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16532 | 5' | -55.1 | NC_004102.1 | + | 774 | 0.67 | 0.203165 |
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Target: 5'- --gGAGGcGCuGCCAGGGcCCUGGCgcaugGCg -3' miRNA: 3'- ccaUUCU-CG-UGGUUCCaGGGCCGa----CG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 4043 | 0.67 | 0.203165 |
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Target: 5'- cGGUGGGAGCAUgcAGGUgggccaCCUGGaaGCu -3' miRNA: 3'- -CCAUUCUCGUGguUCCA------GGGCCgaCG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 4113 | 0.67 | 0.195866 |
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Target: 5'- gGGUu-GAGCACCAAcaccuuguagCCCugGGCUGCg -3' miRNA: 3'- -CCAuuCUCGUGGUUcca-------GGG--CCGACG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 870 | 0.68 | 0.17425 |
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Target: 5'- --aAAGAGCaACCAggaAGGuUCCCuGUUGCa -3' miRNA: 3'- ccaUUCUCG-UGGU---UCC-AGGGcCGACG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 5826 | 0.68 | 0.168925 |
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Target: 5'- cGGUAGcGGCACCGGGGg--CGGCgaGCu -3' miRNA: 3'- -CCAUUcUCGUGGUUCCaggGCCGa-CG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 807 | 0.69 | 0.13558 |
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Target: 5'- ------uGCGCCAGGGcCCUGGCaGCg -3' miRNA: 3'- ccauucuCGUGGUUCCaGGGCCGaCG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 1431 | 0.7 | 0.119351 |
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Target: 5'- uGGUGGGGaacuGgGCgAAGGUCCUGGUagUGCu -3' miRNA: 3'- -CCAUUCU----CgUGgUUCCAGGGCCG--ACG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 5297 | 0.73 | 0.067312 |
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Target: 5'- aGGUcgucacGAGCACCuGGGugcucguuggcggcgUCCUGGCUGCu -3' miRNA: 3'- -CCAuu----CUCGUGGuUCC---------------AGGGCCGACG- -5' |
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| 16532 | 5' | -55.1 | NC_004102.1 | + | 4039 | 1.15 | 2.8e-05 |
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Target: 5'- cGGUAAGAGCACCAAGGUCCCGGCUGCg -3' miRNA: 3'- -CCAUUCUCGUGGUUCCAGGGCCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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