miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16722 3' -46.2 NC_004167.1 + 38738 0.67 0.974394
Target:  5'- -cGCAGACucCCGGuauuGAUCAUAggcCGGCu -3'
miRNA:   3'- uuUGUCUGc-GGCU----UUAGUAUaa-GCCG- -5'
16722 3' -46.2 NC_004167.1 + 17742 0.7 0.876898
Target:  5'- ---aAGACuGCCGggGUUGUGcUUGGCg -3'
miRNA:   3'- uuugUCUG-CGGCuuUAGUAUaAGCCG- -5'
16722 3' -46.2 NC_004167.1 + 9974 0.71 0.859329
Target:  5'- cGAACAGugGgCGAAGcCAUGaaguuUUUGGCg -3'
miRNA:   3'- -UUUGUCugCgGCUUUaGUAU-----AAGCCG- -5'
16722 3' -46.2 NC_004167.1 + 19145 1.11 0.004301
Target:  5'- aAAACAGACGCCGAAAUCAUAUUCGGCu -3'
miRNA:   3'- -UUUGUCUGCGGCUUUAGUAUAAGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.