miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16963 3' -48.3 NC_004322.1 + 2908 1.12 0.000135
Target:  5'- gACAGAGAAAUCCUCAACACCAACCACg -3'
miRNA:   3'- -UGUCUCUUUAGGAGUUGUGGUUGGUG- -5'
16963 3' -48.3 NC_004322.1 + 3414 0.69 0.253169
Target:  5'- uACAGGGAugcCCUCGGCcCCAACaACa -3'
miRNA:   3'- -UGUCUCUuuaGGAGUUGuGGUUGgUG- -5'
16963 3' -48.3 NC_004322.1 + 4512 0.68 0.325989
Target:  5'- --------uUCCUCAAgacCACCAGCCACa -3'
miRNA:   3'- ugucucuuuAGGAGUU---GUGGUUGGUG- -5'
16963 3' -48.3 NC_004322.1 + 5703 0.68 0.325989
Target:  5'- gACGGcc---UCCUCAAC-CCGGCCGCc -3'
miRNA:   3'- -UGUCucuuuAGGAGUUGuGGUUGGUG- -5'
16963 3' -48.3 NC_004322.1 + 3568 0.66 0.425129
Target:  5'- uGCAGuucGAGAUCCUCAAaGCCAaguucuucaACCu- -3'
miRNA:   3'- -UGUCu--CUUUAGGAGUUgUGGU---------UGGug -5'
16963 3' -48.3 NC_004322.1 + 426 0.66 0.43721
Target:  5'- cACAGuGAcaucuUCCUCAACGCCua-CAUc -3'
miRNA:   3'- -UGUCuCUuu---AGGAGUUGUGGuugGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.