miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16969 5' -44.5 NC_004323.1 + 42738 0.68 0.999945
Target:  5'- uUugUACAACUUCGGUacgugUUAGAGu-- -3'
miRNA:   3'- gAugGUGUUGAAGCCAa----AGUCUUugu -5'
16969 5' -44.5 NC_004323.1 + 118422 0.69 0.999778
Target:  5'- ---aCACGACgcCGGUUUCGuGAAACGg -3'
miRNA:   3'- gaugGUGUUGaaGCCAAAGU-CUUUGU- -5'
16969 5' -44.5 NC_004323.1 + 82308 0.7 0.99888
Target:  5'- aCUGCCACGACUg-GGUgUUGGaAAGCAa -3'
miRNA:   3'- -GAUGGUGUUGAagCCAaAGUC-UUUGU- -5'
16969 5' -44.5 NC_004323.1 + 129146 0.7 0.99927
Target:  5'- -cGCCGCAAuCUUCGGag-CAGcAGCAa -3'
miRNA:   3'- gaUGGUGUU-GAAGCCaaaGUCuUUGU- -5'
16969 5' -44.5 NC_004323.1 + 15137 1.1 0.030035
Target:  5'- uCUACCACAACUUCGGUUUCAGAAACAc -3'
miRNA:   3'- -GAUGGUGUUGAAGCCAAAGUCUUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.