miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16979 3' -49.3 NC_004323.1 + 28356 1.09 0.011391
Target:  5'- uACGCUCAAACGACACGAUGUCCAACAu -3'
miRNA:   3'- -UGCGAGUUUGCUGUGCUACAGGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 74546 0.76 0.749296
Target:  5'- cACGCgUCGAACGACACGAUGgacgcgaaaaUgCAGCGg -3'
miRNA:   3'- -UGCG-AGUUUGCUGUGCUAC----------AgGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 47157 0.72 0.904535
Target:  5'- uCGCUCAu-CGACuuGAuauUGUCCGACAc -3'
miRNA:   3'- uGCGAGUuuGCUGugCU---ACAGGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 107806 0.7 0.95315
Target:  5'- gUGUUCAAugcCGACugGGUGUCCGu-- -3'
miRNA:   3'- uGCGAGUUu--GCUGugCUACAGGUugu -5'
16979 3' -49.3 NC_004323.1 + 97057 0.7 0.95724
Target:  5'- cCGCUCGAACauucGCACGc-GUCCGGCGa -3'
miRNA:   3'- uGCGAGUUUGc---UGUGCuaCAGGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 28557 0.7 0.96108
Target:  5'- cACGCUCAAGC-ACACGAUGaaC-ACAg -3'
miRNA:   3'- -UGCGAGUUUGcUGUGCUACagGuUGU- -5'
16979 3' -49.3 NC_004323.1 + 73914 0.69 0.968029
Target:  5'- aACGCUUAGugGAUACGAaGaauacCCGACGu -3'
miRNA:   3'- -UGCGAGUUugCUGUGCUaCa----GGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 10241 0.68 0.988737
Target:  5'- cACGgaaaUCAAugcCGACAUGucUGUCCAGCAa -3'
miRNA:   3'- -UGCg---AGUUu--GCUGUGCu-ACAGGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 85649 0.67 0.990148
Target:  5'- -gGUUCAAACgGACACGcUGUUgGACGc -3'
miRNA:   3'- ugCGAGUUUG-CUGUGCuACAGgUUGU- -5'
16979 3' -49.3 NC_004323.1 + 117336 0.67 0.994466
Target:  5'- aGCGUcaauaGAAUGAgCACGAUG-CCGACAa -3'
miRNA:   3'- -UGCGag---UUUGCU-GUGCUACaGGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 65635 0.67 0.994466
Target:  5'- uGCGUUUggGCGACGgCGuGUGUaCAGCAg -3'
miRNA:   3'- -UGCGAGuuUGCUGU-GC-UACAgGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 64093 0.67 0.994466
Target:  5'- -aGCU--GGCGACGCGAg--CCGGCAa -3'
miRNA:   3'- ugCGAguUUGCUGUGCUacaGGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 82322 0.66 0.997057
Target:  5'- -aGCUCAAacauuagacugccACGACugGGUGUUggaaAGCAa -3'
miRNA:   3'- ugCGAGUU-------------UGCUGugCUACAGg---UUGU- -5'
16979 3' -49.3 NC_004323.1 + 22410 0.66 0.997108
Target:  5'- uACGCUCAAA-GACACGGcua-CGACGa -3'
miRNA:   3'- -UGCGAGUUUgCUGUGCUacagGUUGU- -5'
16979 3' -49.3 NC_004323.1 + 63444 0.66 0.997571
Target:  5'- gGCGCUCAacGACGAUAUcg---CCAGCGa -3'
miRNA:   3'- -UGCGAGU--UUGCUGUGcuacaGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.