miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16981 3' -49.9 NC_004323.1 + 121696 0.66 0.993185
Target:  5'- uUUGUGGCauACACGGGCGUGccggguuuuauguACAUGCg -3'
miRNA:   3'- cAACGUUGc-UGUGUUCGCGC-------------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 18322 0.66 0.994965
Target:  5'- --aGCGACGAUguggacaACAuGUGCGACAUu- -3'
miRNA:   3'- caaCGUUGCUG-------UGUuCGCGCUGUAcg -5'
16981 3' -49.9 NC_004323.1 + 109650 0.66 0.994217
Target:  5'- -aUGCcAUGACGuugcgaGAGCGCGGCGUa- -3'
miRNA:   3'- caACGuUGCUGUg-----UUCGCGCUGUAcg -5'
16981 3' -49.9 NC_004323.1 + 16507 0.66 0.994217
Target:  5'- aGUUGUuggagGACGGCACuAGGCGguuCGAaAUGCg -3'
miRNA:   3'- -CAACG-----UUGCUGUG-UUCGC---GCUgUACG- -5'
16981 3' -49.9 NC_004323.1 + 72072 0.66 0.992235
Target:  5'- -----cGCGACACAacGGCGU-ACGUGCg -3'
miRNA:   3'- caacguUGCUGUGU--UCGCGcUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 64418 0.66 0.994217
Target:  5'- ---aUggUGGCGgAAGCgGUGACGUGCa -3'
miRNA:   3'- caacGuuGCUGUgUUCG-CGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 9175 0.66 0.993284
Target:  5'- -gUGCAcaGCGACACGAaCGCaaaAUGCu -3'
miRNA:   3'- caACGU--UGCUGUGUUcGCGcugUACG- -5'
16981 3' -49.9 NC_004323.1 + 33878 0.66 0.993284
Target:  5'- --cGCAGCGGC-CGAaaGgGACAUGUu -3'
miRNA:   3'- caaCGUUGCUGuGUUcgCgCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 37960 0.66 0.993284
Target:  5'- aUUGCAuuaaaGACGUggGCGUguuGGCGUGCu -3'
miRNA:   3'- cAACGUug---CUGUGuuCGCG---CUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 40420 0.66 0.991895
Target:  5'- --gGCAACGA-GguGGCGCGaaucaccaacgacaGCAUGCg -3'
miRNA:   3'- caaCGUUGCUgUguUCGCGC--------------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 107564 0.66 0.991059
Target:  5'- uUUGaCGGCGACGCAuucgGGCuuuGCGGCGgagcacUGCa -3'
miRNA:   3'- cAAC-GUUGCUGUGU----UCG---CGCUGU------ACG- -5'
16981 3' -49.9 NC_004323.1 + 74220 0.66 0.995043
Target:  5'- cGUgacCAACGcC-CGAGCGCGGCGagGCg -3'
miRNA:   3'- -CAac-GUUGCuGuGUUCGCGCUGUa-CG- -5'
16981 3' -49.9 NC_004323.1 + 118470 0.66 0.994217
Target:  5'- --gGCGGCGGC-CAuGCGUGAag-GCg -3'
miRNA:   3'- caaCGUUGCUGuGUuCGCGCUguaCG- -5'
16981 3' -49.9 NC_004323.1 + 80680 0.66 0.991059
Target:  5'- aUUGCAAU-ACAugcCAAGC-CGAUAUGCg -3'
miRNA:   3'- cAACGUUGcUGU---GUUCGcGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 87093 0.66 0.994806
Target:  5'- uUUGCGACaaagcguauucuuuGuACACAAaaCGCGACAUGUg -3'
miRNA:   3'- cAACGUUG--------------C-UGUGUUc-GCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 96503 0.67 0.988289
Target:  5'- -gUGUAACauaACAAGCGCGccaauuGCAUGUg -3'
miRNA:   3'- caACGUUGcugUGUUCGCGC------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 75366 0.67 0.989747
Target:  5'- --gGCGACGACGCGuuCGaCGACGcgucUGUa -3'
miRNA:   3'- caaCGUUGCUGUGUucGC-GCUGU----ACG- -5'
16981 3' -49.9 NC_004323.1 + 14729 0.67 0.986675
Target:  5'- cUUGCGAaacaguacgGGCGaAAGCGuCGGCGUGCg -3'
miRNA:   3'- cAACGUUg--------CUGUgUUCGC-GCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 85732 0.67 0.986675
Target:  5'- ----aGGCuGCGCGGGCGCGGCG-GCg -3'
miRNA:   3'- caacgUUGcUGUGUUCGCGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 14000 0.67 0.988289
Target:  5'- --cGaCGACGACAgAAGCGCauuaaaAUGCa -3'
miRNA:   3'- caaC-GUUGCUGUgUUCGCGcug---UACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.