miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16987 5' -49.5 NC_004323.1 + 122448 1.08 0.013278
Target:  5'- cCGUUUGACGGGCGACGUGUAUGUUGUu -3'
miRNA:   3'- -GCAAACUGCCCGCUGCACAUACAACA- -5'
16987 5' -49.5 NC_004323.1 + 57718 0.74 0.825345
Target:  5'- ----aGuCGGGCGACGUGUuugauaaaaAUGUUGUa -3'
miRNA:   3'- gcaaaCuGCCCGCUGCACA---------UACAACA- -5'
16987 5' -49.5 NC_004323.1 + 14703 0.69 0.978415
Target:  5'- gGUUUGAUGGGUGACG-GUucuUUGg -3'
miRNA:   3'- gCAAACUGCCCGCUGCaCAuacAACa -5'
16987 5' -49.5 NC_004323.1 + 67160 0.68 0.986573
Target:  5'- uGUUUGACGGcaGCG-CGUGcGUGUUa- -3'
miRNA:   3'- gCAAACUGCC--CGCuGCACaUACAAca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.