miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 3' -51.5 NC_004333.2 + 17857 0.66 0.878057
Target:  5'- gCCGCGcguauggCGGGUGgugucGCAGgcGCGACGg -3'
miRNA:   3'- -GGCGCua-----GCCUAUa----CGUCa-CGUUGCa -5'
16994 3' -51.5 NC_004333.2 + 7483 0.66 0.875668
Target:  5'- gCgGCGAUCGGGUugGUGUucuuugcggucgcgAGUGCGcCGa -3'
miRNA:   3'- -GgCGCUAGCCUA--UACG--------------UCACGUuGCa -5'
16994 3' -51.5 NC_004333.2 + 25154 0.66 0.861685
Target:  5'- aCGCuGA-CGGcaGUGCAGgcggGCGGCGUg -3'
miRNA:   3'- gGCG-CUaGCCuaUACGUCa---CGUUGCA- -5'
16994 3' -51.5 NC_004333.2 + 21530 0.66 0.853112
Target:  5'- gCGCGAUCacgcucacGAgcgGCGGUGCGACa- -3'
miRNA:   3'- gGCGCUAGc-------CUauaCGUCACGUUGca -5'
16994 3' -51.5 NC_004333.2 + 9291 0.67 0.835237
Target:  5'- gCGCGAagcggcgCGGGUGcGCGGacggGCGGCGUu -3'
miRNA:   3'- gGCGCUa------GCCUAUaCGUCa---CGUUGCA- -5'
16994 3' -51.5 NC_004333.2 + 27435 0.67 0.835237
Target:  5'- gCCGCG-UCGGcgAUGUccgGCAGCGc -3'
miRNA:   3'- -GGCGCuAGCCuaUACGucaCGUUGCa -5'
16994 3' -51.5 NC_004333.2 + 14806 0.67 0.825954
Target:  5'- aCGCGAUCGGGca-GCAG-GCGuuccACGa -3'
miRNA:   3'- gGCGCUAGCCUauaCGUCaCGU----UGCa -5'
16994 3' -51.5 NC_004333.2 + 19131 0.67 0.825954
Target:  5'- gCGCGAUCGuGGgcggcGCGGUGCucGCGc -3'
miRNA:   3'- gGCGCUAGC-CUaua--CGUCACGu-UGCa -5'
16994 3' -51.5 NC_004333.2 + 5955 0.67 0.816454
Target:  5'- gCGCGA-CGGGUuuUGCAGUGgGGUGUa -3'
miRNA:   3'- gGCGCUaGCCUAu-ACGUCACgUUGCA- -5'
16994 3' -51.5 NC_004333.2 + 30648 0.68 0.76609
Target:  5'- gCGCGAUCGcuUcgGaCAGUGCGACc- -3'
miRNA:   3'- gGCGCUAGCcuAuaC-GUCACGUUGca -5'
16994 3' -51.5 NC_004333.2 + 4296 0.71 0.621898
Target:  5'- gUGCGAcaaGGAUuUGCAGUGCcGCGa -3'
miRNA:   3'- gGCGCUag-CCUAuACGUCACGuUGCa -5'
16994 3' -51.5 NC_004333.2 + 40500 0.71 0.610553
Target:  5'- gCCGUGGUCGGGUucgccgGCAGUcgaaGCGGuCGUg -3'
miRNA:   3'- -GGCGCUAGCCUAua----CGUCA----CGUU-GCA- -5'
16994 3' -51.5 NC_004333.2 + 11979 0.71 0.599228
Target:  5'- gUCGaCGAUCGcGGccgUAUcGCGGUGCAACGg -3'
miRNA:   3'- -GGC-GCUAGC-CU---AUA-CGUCACGUUGCa -5'
16994 3' -51.5 NC_004333.2 + 23485 0.75 0.37101
Target:  5'- gCGCGcgCGGAUcggcAUGCAGUugaucggcGCAGCGUa -3'
miRNA:   3'- gGCGCuaGCCUA----UACGUCA--------CGUUGCA- -5'
16994 3' -51.5 NC_004333.2 + 47024 1.09 0.002153
Target:  5'- gCCGCGAUCGGAUAUGCAGUGCAACGUc -3'
miRNA:   3'- -GGCGCUAGCCUAUACGUCACGUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.