miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17277 3' -51.5 NC_004367.1 + 29648 0.66 0.989691
Target:  5'- gGCGUCCAUGACAcuaacuauGUUgGCCACu -3'
miRNA:   3'- -UGCAGGUGCUGUcaaac---UAGgUGGUG- -5'
17277 3' -51.5 NC_004367.1 + 105918 0.66 0.988561
Target:  5'- uCGUCCACGAgcuCAGUgaaaaucAUgCGCCGCa -3'
miRNA:   3'- uGCAGGUGCU---GUCAaac----UAgGUGGUG- -5'
17277 3' -51.5 NC_004367.1 + 29998 0.66 0.987017
Target:  5'- gUGUCCACccCGGggcGAUCCGCCGg -3'
miRNA:   3'- uGCAGGUGcuGUCaaaCUAGGUGGUg -5'
17277 3' -51.5 NC_004367.1 + 110821 0.67 0.974169
Target:  5'- aGCGaCCACGGacauuuCAGUUUGuUCCAUgGCa -3'
miRNA:   3'- -UGCaGGUGCU------GUCAAACuAGGUGgUG- -5'
17277 3' -51.5 NC_004367.1 + 97334 0.69 0.949716
Target:  5'- cUGUCCcgcuuuaagggaGCGACAGUauuccUCCACCGCa -3'
miRNA:   3'- uGCAGG------------UGCUGUCAaacu-AGGUGGUG- -5'
17277 3' -51.5 NC_004367.1 + 39874 0.69 0.929896
Target:  5'- --uUCCAUGAagcgaggggacuaCAGUUUGAggCCGCCACu -3'
miRNA:   3'- ugcAGGUGCU-------------GUCAAACUa-GGUGGUG- -5'
17277 3' -51.5 NC_004367.1 + 58268 0.71 0.864635
Target:  5'- aAUGUCCGCuACAGUUuccuUGAUUCACCcCg -3'
miRNA:   3'- -UGCAGGUGcUGUCAA----ACUAGGUGGuG- -5'
17277 3' -51.5 NC_004367.1 + 65764 0.77 0.558811
Target:  5'- aGCGUguccaccCCACGuaACGGUgugGAUCCACCACg -3'
miRNA:   3'- -UGCA-------GGUGC--UGUCAaa-CUAGGUGGUG- -5'
17277 3' -51.5 NC_004367.1 + 40099 1.11 0.006012
Target:  5'- cACGUCCACGACAGUUUGAUCCACCACg -3'
miRNA:   3'- -UGCAGGUGCUGUCAAACUAGGUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.