miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17763 3' -50.8 NC_004629.1 + 173110 0.66 0.998424
Target:  5'- uUUCCAGcgGCaUGCGCU--UAGCGGg -3'
miRNA:   3'- -AAGGUCuaCGcAUGUGGuaAUCGCUa -5'
17763 3' -50.8 NC_004629.1 + 195827 0.66 0.998112
Target:  5'- gUCgCAGAUGaagGUGCACCAggUAGCa-- -3'
miRNA:   3'- aAG-GUCUACg--CAUGUGGUa-AUCGcua -5'
17763 3' -50.8 NC_004629.1 + 87649 0.66 0.997749
Target:  5'- cUCUAGAacUGCGUguaauGCGCCAUggUGGCGu- -3'
miRNA:   3'- aAGGUCU--ACGCA-----UGUGGUA--AUCGCua -5'
17763 3' -50.8 NC_004629.1 + 225191 0.68 0.991087
Target:  5'- gUCCAGAUGgGcuaAUCAUUAGUGAg -3'
miRNA:   3'- aAGGUCUACgCaugUGGUAAUCGCUa -5'
17763 3' -50.8 NC_004629.1 + 9012 0.72 0.930989
Target:  5'- cUCCGaGUGgGUACACCAUUcagcaAGCGGUg -3'
miRNA:   3'- aAGGUcUACgCAUGUGGUAA-----UCGCUA- -5'
17763 3' -50.8 NC_004629.1 + 232097 1.03 0.029526
Target:  5'- gUUCCAGAUGCGUACACCAUUAGCGAUc -3'
miRNA:   3'- -AAGGUCUACGCAUGUGGUAAUCGCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.