miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17764 5' -45.8 NC_004629.1 + 65764 0.66 1
Target:  5'- cCACUcGCuUGAgUGUACUcCgCGUAACCg -3'
miRNA:   3'- -GUGAcUGuACU-ACAUGAuG-GCAUUGG- -5'
17764 5' -45.8 NC_004629.1 + 35363 0.66 1
Target:  5'- uGCUGAguUaGGUGUAUU-CCGUGAUa -3'
miRNA:   3'- gUGACUguA-CUACAUGAuGGCAUUGg -5'
17764 5' -45.8 NC_004629.1 + 190627 0.67 0.999999
Target:  5'- gACUGGuCGUGAUGaUAUUACaCGUGAa- -3'
miRNA:   3'- gUGACU-GUACUAC-AUGAUG-GCAUUgg -5'
17764 5' -45.8 NC_004629.1 + 37890 0.68 0.999996
Target:  5'- --aUGACAUcauuaGAUGUGCUACCugauGCCc -3'
miRNA:   3'- gugACUGUA-----CUACAUGAUGGcau-UGG- -5'
17764 5' -45.8 NC_004629.1 + 138776 0.68 0.999994
Target:  5'- aCAUUGAUGcucaGAUGUGCggugguauaUACUGUAACCu -3'
miRNA:   3'- -GUGACUGUa---CUACAUG---------AUGGCAUUGG- -5'
17764 5' -45.8 NC_004629.1 + 4859 0.68 0.999987
Target:  5'- gCACUGACGUaGAugauguucgUGUACUGgucggugaagccuuCCGUAACg -3'
miRNA:   3'- -GUGACUGUA-CU---------ACAUGAU--------------GGCAUUGg -5'
17764 5' -45.8 NC_004629.1 + 100895 0.69 0.999984
Target:  5'- aACUGGugaAUGggGUGCUACCGguacuGCUa -3'
miRNA:   3'- gUGACUg--UACuaCAUGAUGGCau---UGG- -5'
17764 5' -45.8 NC_004629.1 + 239627 0.69 0.999971
Target:  5'- gCAUgguuACAUGAUGUaauugaggauACUGCUGUAACUg -3'
miRNA:   3'- -GUGac--UGUACUACA----------UGAUGGCAUUGG- -5'
17764 5' -45.8 NC_004629.1 + 216256 0.7 0.999929
Target:  5'- aGCUGAUcaagAUGAUGUACUuggccacGCCGguuUGACUa -3'
miRNA:   3'- gUGACUG----UACUACAUGA-------UGGC---AUUGG- -5'
17764 5' -45.8 NC_004629.1 + 227737 0.71 0.999608
Target:  5'- aCGCUGACGUGcuu--CUGCUGUGGCa -3'
miRNA:   3'- -GUGACUGUACuacauGAUGGCAUUGg -5'
17764 5' -45.8 NC_004629.1 + 149274 0.72 0.999394
Target:  5'- aACUGAUAUug-GUACUGaaGUAACCa -3'
miRNA:   3'- gUGACUGUAcuaCAUGAUggCAUUGG- -5'
17764 5' -45.8 NC_004629.1 + 11691 1.15 0.026897
Target:  5'- uCACUGACAUGAUGUACUACCGUAACCa -3'
miRNA:   3'- -GUGACUGUACUACAUGAUGGCAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.