miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17774 5' -44.5 NC_004629.1 + 120494 0.66 1
Target:  5'- gGGAGGGCuUUAUGuuGUauuACa---- -3'
miRNA:   3'- -CCUCCCG-AAUACggCAauuUGaaaau -5'
17774 5' -44.5 NC_004629.1 + 221592 0.66 1
Target:  5'- gGGAGGGCUauUGCac-UAAAUUUUa- -3'
miRNA:   3'- -CCUCCCGAauACGgcaAUUUGAAAau -5'
17774 5' -44.5 NC_004629.1 + 23513 0.66 1
Target:  5'- cGGGGaGGCuUUAUGuuGUUAaaAACUa--- -3'
miRNA:   3'- -CCUC-CCG-AAUACggCAAU--UUGAaaau -5'
17774 5' -44.5 NC_004629.1 + 114115 0.66 1
Target:  5'- aGAGGGCauUUAUuCaGUUAAACUUUUAa -3'
miRNA:   3'- cCUCCCG--AAUAcGgCAAUUUGAAAAU- -5'
17774 5' -44.5 NC_004629.1 + 80251 0.66 1
Target:  5'- gGGAGGGUUUAUuUCGUU-AACUa--- -3'
miRNA:   3'- -CCUCCCGAAUAcGGCAAuUUGAaaau -5'
17774 5' -44.5 NC_004629.1 + 152797 0.67 1
Target:  5'- gGGAGGGCUUuauuucGUCGUUuaAGACa---- -3'
miRNA:   3'- -CCUCCCGAAua----CGGCAA--UUUGaaaau -5'
17774 5' -44.5 NC_004629.1 + 71616 0.66 1
Target:  5'- -aGGGGUUUAUGUCGUcuuACUUa-- -3'
miRNA:   3'- ccUCCCGAAUACGGCAauuUGAAaau -5'
17774 5' -44.5 NC_004629.1 + 85160 0.66 1
Target:  5'- gGGAGGGCaUUAUGuuGU---AUUUUa- -3'
miRNA:   3'- -CCUCCCG-AAUACggCAauuUGAAAau -5'
17774 5' -44.5 NC_004629.1 + 276172 0.66 1
Target:  5'- gGGAGGGUUUAUGCU----AACa---- -3'
miRNA:   3'- -CCUCCCGAAUACGGcaauUUGaaaau -5'
17774 5' -44.5 NC_004629.1 + 265466 0.68 1
Target:  5'- cGGAgagGGGUUUAUGCCGU--AAUUa--- -3'
miRNA:   3'- -CCU---CCCGAAUACGGCAauUUGAaaau -5'
17774 5' -44.5 NC_004629.1 + 44011 0.68 1
Target:  5'- aGGGGGUUaUAUGCCGUUuuAUUa--- -3'
miRNA:   3'- cCUCCCGA-AUACGGCAAuuUGAaaau -5'
17774 5' -44.5 NC_004629.1 + 237016 0.66 1
Target:  5'- gGGAGGGCUauUGCac-UAAAUUUUa- -3'
miRNA:   3'- -CCUCCCGAauACGgcaAUUUGAAAau -5'
17774 5' -44.5 NC_004629.1 + 153072 0.68 0.999999
Target:  5'- gGGAGGGCaaUAUGUCGUuuUAAAUa---- -3'
miRNA:   3'- -CCUCCCGa-AUACGGCA--AUUUGaaaau -5'
17774 5' -44.5 NC_004629.1 + 153165 0.68 0.999999
Target:  5'- -uAGGGCUuucUAUGCUGUuuUAAGCUa--- -3'
miRNA:   3'- ccUCCCGA---AUACGGCA--AUUUGAaaau -5'
17774 5' -44.5 NC_004629.1 + 208264 0.68 0.999999
Target:  5'- gGGAGGGCaUUAUGuuGUUuuAACc---- -3'
miRNA:   3'- -CCUCCCG-AAUACggCAAu-UUGaaaau -5'
17774 5' -44.5 NC_004629.1 + 77798 0.68 0.999998
Target:  5'- aGGGGaGGCuUUAUGCUGaUUAuuACUUUUAc -3'
miRNA:   3'- -CCUC-CCG-AAUACGGC-AAUu-UGAAAAU- -5'
17774 5' -44.5 NC_004629.1 + 133226 0.68 0.999998
Target:  5'- gGGAGGGCaUUAUGuuGUUuagAAAUUa--- -3'
miRNA:   3'- -CCUCCCG-AAUACggCAA---UUUGAaaau -5'
17774 5' -44.5 NC_004629.1 + 120768 0.7 0.999986
Target:  5'- gGGAGGGCcUAUGuCUGUUAcuCUUcUAa -3'
miRNA:   3'- -CCUCCCGaAUAC-GGCAAUuuGAAaAU- -5'
17774 5' -44.5 NC_004629.1 + 114176 0.71 0.999855
Target:  5'- -uAGGGCUaUAUGCCGUUGAGu----- -3'
miRNA:   3'- ccUCCCGA-AUACGGCAAUUUgaaaau -5'
17774 5' -44.5 NC_004629.1 + 171716 0.72 0.999695
Target:  5'- gGGAGGGCUUAUGuuGcUUAuaauuaUUUUAa -3'
miRNA:   3'- -CCUCCCGAAUACggC-AAUuug---AAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.