miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18041 5' -54 NC_004673.1 + 1846 0.67 0.053893
Target:  5'- ---uUGGGCUU--AGAUCUAgauGCCCACa -3'
miRNA:   3'- auacACCCGGAuuUCUGGAU---CGGGUG- -5'
18041 5' -54 NC_004673.1 + 1908 0.71 0.020566
Target:  5'- aAUGUGGGCU--AGGuCUUuaGGCCCACa -3'
miRNA:   3'- aUACACCCGGauUUCuGGA--UCGGGUG- -5'
18041 5' -54 NC_004673.1 + 1874 0.74 0.012895
Target:  5'- uUAUGUGGGCaucuAGAUCUaAGCCCAa -3'
miRNA:   3'- -AUACACCCGgauuUCUGGA-UCGGGUg -5'
18041 5' -54 NC_004673.1 + 1878 1.09 0.000008
Target:  5'- uUAUGUGGGCCUAAAGACCUAGCCCACa -3'
miRNA:   3'- -AUACACCCGGAUUUCUGGAUCGGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.