miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18047 3' -57.6 NC_004680.1 + 11113 0.66 0.625935
Target:  5'- aCAUCGaCGGGGCcggGgGGCCggcugGCCCg -3'
miRNA:   3'- -GUAGUaGCUCUGca-CgCCGGa----CGGGg -5'
18047 3' -57.6 NC_004680.1 + 40490 0.66 0.625935
Target:  5'- --aCGUCGuGGCGUGgGGCuCUGCg-- -3'
miRNA:   3'- guaGUAGCuCUGCACgCCG-GACGggg -5'
18047 3' -57.6 NC_004680.1 + 9779 0.66 0.611968
Target:  5'- uGUCGUCGuuGCcUGUGGCgggccgguuuucguCUGCCCUg -3'
miRNA:   3'- gUAGUAGCucUGcACGCCG--------------GACGGGG- -5'
18047 3' -57.6 NC_004680.1 + 6050 0.66 0.593749
Target:  5'- uCGUCAaUGGGcGCGUGUGGC-UGCCUg -3'
miRNA:   3'- -GUAGUaGCUC-UGCACGCCGgACGGGg -5'
18047 3' -57.6 NC_004680.1 + 40682 0.67 0.572432
Target:  5'- --aCGUCGAGGCGcGgGGCuCUGCgCa -3'
miRNA:   3'- guaGUAGCUCUGCaCgCCG-GACGgGg -5'
18047 3' -57.6 NC_004680.1 + 58648 0.67 0.572432
Target:  5'- aCGUCAUCGuauccGGCGaccGCGGCU--CCCCa -3'
miRNA:   3'- -GUAGUAGCu----CUGCa--CGCCGGacGGGG- -5'
18047 3' -57.6 NC_004680.1 + 12404 0.67 0.561839
Target:  5'- uGUCGUCuGGuGCGUGgGcGCCUaacccaGCCCCg -3'
miRNA:   3'- gUAGUAGcUC-UGCACgC-CGGA------CGGGG- -5'
18047 3' -57.6 NC_004680.1 + 42442 0.67 0.530413
Target:  5'- --gCGcCGAGAUc-GUGGCCUGCCCa -3'
miRNA:   3'- guaGUaGCUCUGcaCGCCGGACGGGg -5'
18047 3' -57.6 NC_004680.1 + 34664 0.68 0.509821
Target:  5'- uCGUCGUUGuuGCGUGCGGagacgaUGCCUa -3'
miRNA:   3'- -GUAGUAGCucUGCACGCCgg----ACGGGg -5'
18047 3' -57.6 NC_004680.1 + 40658 0.68 0.479588
Target:  5'- --aCGUCGuGGCGUGgGGCuCUGCgCa -3'
miRNA:   3'- guaGUAGCuCUGCACgCCG-GACGgGg -5'
18047 3' -57.6 NC_004680.1 + 40610 0.68 0.479588
Target:  5'- --aCGUCGuGGCGUGgGGCuCUGCgCa -3'
miRNA:   3'- guaGUAGCuCUGCACgCCG-GACGgGg -5'
18047 3' -57.6 NC_004680.1 + 40562 0.68 0.479588
Target:  5'- --aCGUCGuGGCGUGgGGCuCUGCgCg -3'
miRNA:   3'- guaGUAGCuCUGCACgCCG-GACGgGg -5'
18047 3' -57.6 NC_004680.1 + 40436 0.69 0.440704
Target:  5'- --aCAUCGAGuccgaucccgGCGUGCGGC-UGCUUCu -3'
miRNA:   3'- guaGUAGCUC----------UGCACGCCGgACGGGG- -5'
18047 3' -57.6 NC_004680.1 + 23836 0.69 0.431264
Target:  5'- aCGUgGUCGugguuGACGU-CGGCCUuaucguccaGCCCCu -3'
miRNA:   3'- -GUAgUAGCu----CUGCAcGCCGGA---------CGGGG- -5'
18047 3' -57.6 NC_004680.1 + 12692 0.69 0.431264
Target:  5'- --cCAUCGAGuACG-GCGGCCagGUCgCCg -3'
miRNA:   3'- guaGUAGCUC-UGCaCGCCGGa-CGG-GG- -5'
18047 3' -57.6 NC_004680.1 + 50034 0.69 0.431264
Target:  5'- gCAUCuUCGAGcuggGCGUGCcagaGCCUGCaaCCCg -3'
miRNA:   3'- -GUAGuAGCUC----UGCACGc---CGGACG--GGG- -5'
18047 3' -57.6 NC_004680.1 + 49261 0.7 0.385911
Target:  5'- cCGUCGUCacGGACGUaGCGGUUgGUCCCg -3'
miRNA:   3'- -GUAGUAGc-UCUGCA-CGCCGGaCGGGG- -5'
18047 3' -57.6 NC_004680.1 + 13049 0.72 0.305139
Target:  5'- gGUgAUaCGcGACGUcGCGGCCUGUUCCg -3'
miRNA:   3'- gUAgUA-GCuCUGCA-CGCCGGACGGGG- -5'
18047 3' -57.6 NC_004680.1 + 40514 0.74 0.220398
Target:  5'- --aCGUCGAGGCGUGgGGCuCUGCaCgCg -3'
miRNA:   3'- guaGUAGCUCUGCACgCCG-GACG-GgG- -5'
18047 3' -57.6 NC_004680.1 + 7669 0.75 0.198687
Target:  5'- -uUCAUCGAG-CGUgGCGGCCUGCa-- -3'
miRNA:   3'- guAGUAGCUCuGCA-CGCCGGACGggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.